CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-001957
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 60S ribosomal protein L28 
Protein Synonyms/Alias
 L27a; L29; RP44; RP62; YL24 
Gene Name
 RPL28 
Gene Synonyms/Alias
 CYH2; YGL103W 
Created Date
 July 27, 2013 
Organism
 Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) 
NCBI Taxa ID
 559292 
Lysine Modification
Position
Peptide
Type
References
47HHRINMDKYHPGYFGacetylation[1]
47HHRINMDKYHPGYFGubiquitination[2]
55YHPGYFGKVGMRYFHacetylation[1]
63VGMRYFHKQQAHFWKacetylation[1]
70KQQAHFWKPVLNLDKacetylation[1]
70KQQAHFWKPVLNLDKubiquitination[2]
86WTLIPEDKRDQYLKSacetylation[1]
86WTLIPEDKRDQYLKSubiquitination[2, 3]
92DKRDQYLKSASKETAacetylation[1]
92DKRDQYLKSASKETAubiquitination[2]
96QYLKSASKETAPVIDacetylation[1]
96QYLKSASKETAPVIDubiquitination[2, 3]
126PNVPVIVKARFVSKLubiquitination[2, 3]
132VKARFVSKLAEEKIRacetylation[1]
132VKARFVSKLAEEKIRubiquitination[2, 4]
137VSKLAEEKIRAAGGVacetylation[1]
137VSKLAEEKIRAAGGVubiquitination[2]
Reference
 [1] Proteome-wide analysis of lysine acetylation suggests its broad regulatory scope in Saccharomyces cerevisiae.
 Henriksen P, Wagner SA, Weinert BT, Sharma S, Bacinskaja G, Rehman M, Juffer AH, Walther TC, Lisby M, Choudhary C.
 Mol Cell Proteomics. 2012 Nov;11(11):1510-22. [PMID: 22865919]
 [2] Global analysis of phosphorylation and ubiquitylation cross-talk in protein degradation.
 Swaney DL, Beltrao P, Starita L, Guo A, Rush J, Fields S, Krogan NJ, VillĂ©n J.
 Nat Methods. 2013 Jul;10(7):676-82. [PMID: 23749301]
 [3] Sites of ubiquitin attachment in Saccharomyces cerevisiae.
 Starita LM, Lo RS, Eng JK, von Haller PD, Fields S.
 Proteomics. 2012 Jan;12(2):236-40. [PMID: 22106047]
 [4] A perturbed ubiquitin landscape distinguishes between ubiquitin in trafficking and in proteolysis.
 Ziv I, Matiuhin Y, Kirkpatrick DS, Erpapazoglou Z, Leon S, Pantazopoulou M, Kim W, Gygi SP, Haguenauer-Tsapis R, Reis N, Glickman MH, Kleifeld O.
 Mol Cell Proteomics. 2011 May;10(5):M111.009753. [PMID: 21427232
Functional Description
  
Sequence Annotation
 MOTIF 7 13 Nuclear localization signal.
 MOTIF 24 30 Nuclear localization signal.  
Keyword
 3D-structure; Antibiotic resistance; Complete proteome; Cycloheximide resistance; Cytoplasm; Reference proteome; Ribonucleoprotein; Ribosomal protein. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 149 AA 
Protein Sequence
MPSRFTKTRK HRGHVSAGKG RIGKHRKHPG GRGMAGGQHH HRINMDKYHP GYFGKVGMRY 60
FHKQQAHFWK PVLNLDKLWT LIPEDKRDQY LKSASKETAP VIDTLAAGYG KILGKGRIPN 120
VPVIVKARFV SKLAEEKIRA AGGVVELIA 149 
Gene Ontology
 GO:0022625; C:cytosolic large ribosomal subunit; TAS:SGD.
 GO:0005634; C:nucleus; IMP:SGD.
 GO:0003723; F:RNA binding; IDA:SGD.
 GO:0003735; F:structural constituent of ribosome; TAS:SGD.
 GO:0002181; P:cytoplasmic translation; TAS:SGD.
 GO:0046677; P:response to antibiotic; IEA:UniProtKB-KW.
 GO:0046898; P:response to cycloheximide; IEA:UniProtKB-KW. 
Interpro
 IPR001196; Ribosomal_L15_CS.
 IPR021131; Ribosomal_L18e/L15P. 
Pfam
 PF00828; Ribosomal_L18e 
SMART
  
PROSITE
 PS00475; RIBOSOMAL_L15 
PRINTS