CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-002556
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Heat shock protein HSP 90-alpha 
Protein Synonyms/Alias
 Heat shock 86 kDa; HSP 86; HSP86; Renal carcinoma antigen NY-REN-38 
Gene Name
 HSP90AA1 
Gene Synonyms/Alias
 HSP90A; HSPC1; HSPCA 
Created Date
 July 27, 2013 
Organism
 Homo sapiens (Human) 
NCBI Taxa ID
 9606 
Lysine Modification
Position
Peptide
Type
References
58NSSDALDKIRYESLTubiquitination[1]
69ESLTDPSKLDSGKELacetylation[2]
74PSKLDSGKELHINLIubiquitination[1, 3]
84HINLIPNKQDRTLTIubiquitination[3]
100DTGIGMTKADLINNLubiquitination[4, 5]
112NNLGTIAKSGTKAFMacetylation[6]
112NNLGTIAKSGTKAFMubiquitination[1, 3, 5, 7, 8, 9, 10]
153EKVTVITKHNDDEQYubiquitination[7, 10]
191TKVILHLKEDQTEYLubiquitination[1]
209RIKEIVKKHSQFIGYubiquitination[3]
224PITLFVEKERDKEVSacetylation[2]
224PITLFVEKERDKEVSubiquitination[1, 3]
228FVEKERDKEVSDDEAubiquitination[1]
274EEKKDGDKKKKKKIKacetylation[11]
275EKKDGDKKKKKKIKEubiquitination[3]
276KKDGDKKKKKKIKEKacetylation[11]
281KKKKKKIKEKYIDQEubiquitination[8, 10]
283KKKKIKEKYIDQEELacetylation[2, 6, 10, 12]
283KKKKIKEKYIDQEELubiquitination[1, 3, 8, 10]
292IDQEELNKTKPIWTRacetylation[2, 6, 10, 12, 13]
292IDQEELNKTKPIWTRubiquitination[1, 3, 8, 9, 10]
294QEELNKTKPIWTRNPacetylation[13, 14]
294QEELNKTKPIWTRNPubiquitination[1, 3, 5, 7, 8, 9, 10]
314EEYGEFYKSLTNDWEacetylation[6]
314EEYGEFYKSLTNDWEubiquitination[1, 3, 5, 7, 9, 10]
327WEDHLAVKHFSVEGQacetylation[13]
327WEDHLAVKHFSVEGQubiquitination[1, 7, 8, 9, 10]
362RKKKNNIKLYVRRVFacetylation[2, 6, 12]
362RKKKNNIKLYVRRVFubiquitination[1, 3, 5, 7, 8, 9, 10]
407REMLQQSKILKVIRKacetylation[2, 6, 10, 12]
407REMLQQSKILKVIRKubiquitination[1, 3, 4, 5, 7, 8, 9, 10]
410LQQSKILKVIRKNLVacetylation[2, 13]
419IRKNLVKKCLELFTEubiquitination[3, 5, 7, 8]
436EDKENYKKFYEQFSKacetylation[13]
436EDKENYKKFYEQFSKubiquitination[1, 3, 8, 10]
443KFYEQFSKNIKLGIHacetylation[2, 6, 10]
443KFYEQFSKNIKLGIHubiquitination[1, 3, 5, 7, 8, 9, 10]
446EQFSKNIKLGIHEDSubiquitination[3, 5, 8, 10]
457HEDSQNRKKLSELLRubiquitination[8]
458EDSQNRKKLSELLRYacetylation[2, 10, 12]
458EDSQNRKKLSELLRYubiquitination[8, 10]
478GDEMVSLKDYCTRMKubiquitination[5, 7, 8, 10]
485KDYCTRMKENQKHIYacetylation[10, 13]
485KDYCTRMKENQKHIYubiquitination[8]
489TRMKENQKHIYYITGacetylation[2, 6, 10, 12, 13]
489TRMKENQKHIYYITGubiquitination[1, 3, 9]
499YYITGETKDQVANSAacetylation[6, 10]
499YYITGETKDQVANSAubiquitination[1, 3, 7, 8, 9]
513AFVERLRKHGLEVIYmethylation[15]
539QLKEFEGKTLVSVTKacetylation[6]
539QLKEFEGKTLVSVTKubiquitination[3, 8, 10]
546KTLVSVTKEGLELPEacetylation[6]
546KTLVSVTKEGLELPEubiquitination[1, 9]
558LPEDEEEKKKQEEKKacetylation[2, 6, 10, 12]
558LPEDEEEKKKQEEKKubiquitination[1, 3, 10]
559PEDEEEKKKQEEKKTacetylation[10]
559PEDEEEKKKQEEKKTubiquitination[10]
565KKKQEEKKTKFENLCacetylation[10]
565KKKQEEKKTKFENLCubiquitination[1, 3, 8]
567KQEEKKTKFENLCKIacetylation[10]
567KQEEKKTKFENLCKIubiquitination[8, 10]
573TKFENLCKIMKDILEacetylation[2, 12]
576ENLCKIMKDILEKKVacetylation[2, 6, 10]
576ENLCKIMKDILEKKVubiquitination[8, 10]
581IMKDILEKKVEKVVVacetylation[10]
581IMKDILEKKVEKVVVubiquitination[8, 10]
582MKDILEKKVEKVVVSubiquitination[8]
585ILEKKVEKVVVSNRLacetylation[2]
585ILEKKVEKVVVSNRLubiquitination[8, 16]
615ANMERIMKAQALRDNmethylation[15]
615ANMERIMKAQALRDNubiquitination[1, 3, 5, 7, 8, 9, 10, 17]
631TMGYMAAKKHLEINPacetylation[10]
631TMGYMAAKKHLEINPubiquitination[1, 5, 8, 9, 10]
632MGYMAAKKHLEINPDubiquitination[3, 8, 10]
Reference
 [1] Systematic and quantitative assessment of the ubiquitin-modified proteome.
 Kim W, Bennett EJ, Huttlin EL, Guo A, Li J, Possemato A, Sowa ME, Rad R, Rush J, Comb MJ, Harper JW, Gygi SP.
 Mol Cell. 2011 Oct 21;44(2):325-40. [PMID: 21906983]
 [2] Lysine acetylation targets protein complexes and co-regulates major cellular functions.
 Choudhary C, Kumar C, Gnad F, Nielsen ML, Rehman M, Walther TC, Olsen JV, Mann M.
 Science. 2009 Aug 14;325(5942):834-40. [PMID: 19608861]
 [3] A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles.
 Wagner SA, Beli P, Weinert BT, Nielsen ML, Cox J, Mann M, Choudhary C.
 Mol Cell Proteomics. 2011 Oct;10(10):M111.013284. [PMID: 21890473]
 [4] Ubiquitin ligase substrate identification through quantitative proteomics at both the protein and peptide levels.
 Lee KA, Hammerle LP, Andrews PS, Stokes MP, Mustelin T, Silva JC, Black RA, Doedens JR.
 J Biol Chem. 2011 Dec 2;286(48):41530-8. [PMID: 21987572]
 [5] Methods for quantification of in vivo changes in protein ubiquitination following proteasome and deubiquitinase inhibition.
 Udeshi ND, Mani DR, Eisenhaure T, Mertins P, Jaffe JD, Clauser KR, Hacohen N, Carr SA.
 Mol Cell Proteomics. 2012 May;11(5):148-59. [PMID: 22505724]
 [6] Proteomic investigations of lysine acetylation identify diverse substrates of mitochondrial deacetylase sirt3.
 Sol EM, Wagner SA, Weinert BT, Kumar A, Kim HS, Deng CX, Choudhary C.
 PLoS One. 2012;7(12):e50545. [PMID: 23236377]
 [7] Global identification of modular cullin-RING ligase substrates.
 Emanuele MJ, Elia AE, Xu Q, Thoma CR, Izhar L, Leng Y, Guo A, Chen YN, Rush J, Hsu PW, Yen HC, Elledge SJ.
 Cell. 2011 Oct 14;147(2):459-74. [PMID: 21963094]
 [8] Refined preparation and use of anti-diglycine remnant (K-ε-GG) antibody enables routine quantification of 10,000s of ubiquitination sites in single proteomics experiments.
 Udeshi ND, Svinkina T, Mertins P, Kuhn E, Mani DR, Qiao JW, Carr SA.
 Mol Cell Proteomics. 2013 Mar;12(3):825-31. [PMID: 23266961]
 [9] Landscape of the PARKIN-dependent ubiquitylome in response to mitochondrial depolarization.
 Sarraf SA, Raman M, Guarani-Pereira V, Sowa ME, Huttlin EL, Gygi SP, Harper JW.
 Nature. 2013 Apr 18;496(7445):372-6. [PMID: 23503661]
 [10] Integrated proteomic analysis of post-translational modifications by serial enrichment.
 Mertins P, Qiao JW, Patel J, Udeshi ND, Clauser KR, Mani DR, Burgess MW, Gillette MA, Jaffe JD, Carr SA.
 Nat Methods. 2013 Jul;10(7):634-7. [PMID: 23749302]
 [11] Regulation of cellular metabolism by protein lysine acetylation.
 Zhao S, Xu W, Jiang W, Yu W, Lin Y, Zhang T, Yao J, Zhou L, Zeng Y, Li H, Li Y, Shi J, An W, Hancock SM, He F, Qin L, Chin J, Yang P, Chen X, Lei Q, Xiong Y, Guan KL.
 Science. 2010 Feb 19;327(5968):1000-4. [PMID: 20167786]
 [12] Proteomic investigations reveal a role for RNA processing factor THRAP3 in the DNA damage response.
 Beli P, Lukashchuk N, Wagner SA, Weinert BT, Olsen JV, Baskcomb L, Mann M, Jackson SP, Choudhary C.
 Mol Cell. 2012 Apr 27;46(2):212-25. [PMID: 22424773]
 [13] Monoclonal antibody cocktail as an enrichment tool for acetylome analysis.
 Shaw PG, Chaerkady R, Zhang Z, Davidson NE, Pandey A.
 Anal Chem. 2011 May 15;83(10):3623-6. [PMID: 21466224]
 [14] An acetylation site in the middle domain of Hsp90 regulates chaperone function.
 Scroggins BT, Robzyk K, Wang D, Marcu MG, Tsutsumi S, Beebe K, Cotter RJ, Felts S, Toft D, Karnitz L, Rosen N, Neckers L.
 Mol Cell. 2007 Jan 12;25(1):151-9. [PMID: 17218278]
 [15] Large-scale global identification of protein lysine methylation in vivo.
 Cao XJ, Arnaudo AM, Garcia BA.
 Epigenetics. 2013 May 1;8(5):477-85. [PMID: 23644510]
 [16] Proteome-wide identification of ubiquitylation sites by conjugation of engineered lysine-less ubiquitin.
 Oshikawa K, Matsumoto M, Oyamada K, Nakayama KI.
 J Proteome Res. 2012 Feb 3;11(2):796-807. [PMID: 22053931]
 [17] Mass spectrometric analysis of lysine ubiquitylation reveals promiscuity at site level.
 Danielsen JM, Sylvestersen KB, Bekker-Jensen S, Szklarczyk D, Poulsen JW, Horn H, Jensen LJ, Mailand N, Nielsen ML.
 Mol Cell Proteomics. 2011 Mar;10(3):M110.003590. [PMID: 21139048
Functional Description
 Molecular chaperone that promotes the maturation, structural maintenance and proper regulation of specific target proteins involved for instance in cell cycle control and signal transduction. Undergoes a functional cycle that is linked to its ATPase activity. This cycle probably induces conformational changes in the client proteins, thereby causing their activation. Interacts dynamically with various co-chaperones that modulate its substrate recognition, ATPase cycle and chaperone function. 
Sequence Annotation
 REGION 682 732 Required for homodimerization.
 MOTIF 728 732 TPR repeat-binding.
 BINDING 51 51 ATP.
 BINDING 93 93 ATP.
 BINDING 112 112 ATP (By similarity).
 BINDING 138 138 ATP; via amide nitrogen.
 BINDING 400 400 ATP (By similarity).
 MOD_RES 5 5 Phosphothreonine; by PRKDC.
 MOD_RES 7 7 Phosphothreonine; by PRKDC.
 MOD_RES 224 224 N6-acetyllysine.
 MOD_RES 231 231 Phosphoserine.
 MOD_RES 252 252 Phosphoserine.
 MOD_RES 263 263 Phosphoserine.
 MOD_RES 313 313 Phosphotyrosine (By similarity).
 MOD_RES 399 399 Phosphoserine.
 MOD_RES 410 410 N6-acetyllysine.
 MOD_RES 443 443 N6-acetyllysine.
 MOD_RES 458 458 N6-acetyllysine.
 MOD_RES 489 489 N6-acetyllysine.
 MOD_RES 492 492 Phosphotyrosine (By similarity).
 MOD_RES 576 576 N6-acetyllysine.
 MOD_RES 585 585 N6-acetyllysine.
 MOD_RES 598 598 S-nitrosocysteine.  
Keyword
 3D-structure; Acetylation; Alternative splicing; ATP-binding; Chaperone; Complete proteome; Cytoplasm; Direct protein sequencing; Nucleotide-binding; Phosphoprotein; Reference proteome; S-nitrosylation; Stress response; Ubl conjugation. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 732 AA 
Protein Sequence
MPEETQTQDQ PMEEEEVETF AFQAEIAQLM SLIINTFYSN KEIFLRELIS NSSDALDKIR 60
YESLTDPSKL DSGKELHINL IPNKQDRTLT IVDTGIGMTK ADLINNLGTI AKSGTKAFME 120
ALQAGADISM IGQFGVGFYS AYLVAEKVTV ITKHNDDEQY AWESSAGGSF TVRTDTGEPM 180
GRGTKVILHL KEDQTEYLEE RRIKEIVKKH SQFIGYPITL FVEKERDKEV SDDEAEEKED 240
KEEEKEKEEK ESEDKPEIED VGSDEEEEKK DGDKKKKKKI KEKYIDQEEL NKTKPIWTRN 300
PDDITNEEYG EFYKSLTNDW EDHLAVKHFS VEGQLEFRAL LFVPRRAPFD LFENRKKKNN 360
IKLYVRRVFI MDNCEELIPE YLNFIRGVVD SEDLPLNISR EMLQQSKILK VIRKNLVKKC 420
LELFTELAED KENYKKFYEQ FSKNIKLGIH EDSQNRKKLS ELLRYYTSAS GDEMVSLKDY 480
CTRMKENQKH IYYITGETKD QVANSAFVER LRKHGLEVIY MIEPIDEYCV QQLKEFEGKT 540
LVSVTKEGLE LPEDEEEKKK QEEKKTKFEN LCKIMKDILE KKVEKVVVSN RLVTSPCCIV 600
TSTYGWTANM ERIMKAQALR DNSTMGYMAA KKHLEINPDH SIIETLRQKA EADKNDKSVK 660
DLVILLYETA LLSSGFSLED PQTHANRIYR MIKLGLGIDE DDPTADDTSA AVTEEMPPLE 720
GDDDTSRMEE VD 732 
Gene Ontology
 GO:0016324; C:apical plasma membrane; IEA:Compara.
 GO:0016323; C:basolateral plasma membrane; IEA:Compara.
 GO:0031526; C:brush border membrane; IEA:Compara.
 GO:0009986; C:cell surface; IEA:Compara.
 GO:0005829; C:cytosol; NAS:UniProtKB.
 GO:0031012; C:extracellular matrix; IEA:Compara.
 GO:0042470; C:melanosome; IEA:UniProtKB-SubCell.
 GO:0043005; C:neuron projection; IEA:Compara.
 GO:0043025; C:neuronal cell body; IEA:Compara.
 GO:0048471; C:perinuclear region of cytoplasm; IEA:Compara.
 GO:0005886; C:plasma membrane; TAS:Reactome.
 GO:0043234; C:protein complex; IEA:Compara.
 GO:0005524; F:ATP binding; TAS:UniProtKB.
 GO:0016887; F:ATPase activity; IDA:UniProtKB.
 GO:0002135; F:CTP binding; IEA:Compara.
 GO:0032564; F:dATP binding; IEA:Compara.
 GO:0005525; F:GTP binding; IEA:Compara.
 GO:0003729; F:mRNA binding; IEA:Compara.
 GO:0030235; F:nitric-oxide synthase regulator activity; IDA:UniProtKB.
 GO:0042803; F:protein homodimerization activity; TAS:UniProtKB.
 GO:0030911; F:TPR domain binding; IDA:UniProtKB.
 GO:0002134; F:UTP binding; IEA:Compara.
 GO:0007411; P:axon guidance; TAS:Reactome.
 GO:0010659; P:cardiac muscle cell apoptotic process; IEA:Compara.
 GO:0051131; P:chaperone-mediated protein complex assembly; IDA:BHF-UCL.
 GO:0038096; P:Fc-gamma receptor signaling pathway involved in phagocytosis; TAS:Reactome.
 GO:0000086; P:G2/M transition of mitotic cell cycle; TAS:Reactome.
 GO:0045087; P:innate immune response; TAS:Reactome.
 GO:0001764; P:neuron migration; IEA:Compara.
 GO:0046209; P:nitric oxide metabolic process; TAS:Reactome.
 GO:0060452; P:positive regulation of cardiac muscle contraction; IEA:Compara.
 GO:0045793; P:positive regulation of cell size; IEA:Compara.
 GO:0010592; P:positive regulation of lamellipodium assembly; IEA:Compara.
 GO:0045429; P:positive regulation of nitric oxide biosynthetic process; ISS:UniProtKB.
 GO:0033160; P:positive regulation of protein import into nucleus, translocation; IEA:Compara.
 GO:0045040; P:protein import into mitochondrial outer membrane; IDA:BHF-UCL.
 GO:0042026; P:protein refolding; TAS:UniProtKB.
 GO:0050999; P:regulation of nitric-oxide synthase activity; TAS:Reactome.
 GO:0043627; P:response to estrogen stimulus; IEA:Compara.
 GO:0009408; P:response to heat; IEA:Compara.
 GO:0009651; P:response to salt stress; IEA:Compara.
 GO:0006986; P:response to unfolded protein; NAS:UniProtKB.
 GO:0003009; P:skeletal muscle contraction; IEA:Compara. 
Interpro
 IPR003594; HATPase_ATP-bd.
 IPR019805; Heat_shock_protein_90_CS.
 IPR001404; Hsp90.
 IPR020575; Hsp90_N.
 IPR020568; Ribosomal_S5_D2-typ_fold. 
Pfam
 PF02518; HATPase_c
 PF00183; HSP90 
SMART
 SM00387; HATPase_c 
PROSITE
 PS00298; HSP90 
PRINTS
 PR00775; HEATSHOCK90.