CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-030710
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 T-complex protein 1 subunit theta 
Protein Synonyms/Alias
 cDNA FLJ53379, highly similar to T-complex protein 1 subunit theta 
Gene Name
 CCT8 
Gene Synonyms/Alias
  
Created Date
 July 27, 2013 
Organism
 Homo sapiens (Human) 
NCBI Taxa ID
 9606 
Lysine Modification
Position
Peptide
Type
References
18YRNIQACKELAQTTRubiquitination[1, 2, 3, 4, 5]
35YGPNGMNKMVINHLEubiquitination[4, 6]
43MVINHLEKLFVTNDAubiquitination[1, 2, 3, 4, 5, 6, 7, 8]
119GYEIACRKAHEILPNubiquitination[4, 5]
133NLVCCSAKNLRDIDEubiquitination[2, 4, 5, 6]
152LRTSIMSKQYGNEVFubiquitination[3, 4, 5, 6]
206LHGMVFKKETEGDVTacetylation[9]
206LHGMVFKKETEGDVTubiquitination[4, 5]
216EGDVTSVKDAKIAVYubiquitination[1, 2, 3, 4, 5, 8]
235DGMITETKGTVLIKTubiquitination[2, 3, 4, 5]
241TKGTVLIKTAEELMNubiquitination[1, 2, 4, 5, 6, 8]
251EELMNFSKGEENLMDacetylation[9]
251EELMNFSKGEENLMDubiquitination[1, 2, 3, 4, 5, 8, 10]
277NVVVTGGKVADMALHubiquitination[2, 4, 5]
288MALHYANKYNIMLVRubiquitination[4]
299MLVRLNSKWDLRRLCacetylation[5, 9, 11]
299MLVRLNSKWDLRRLCubiquitination[2, 4, 5]
307WDLRRLCKTVGATALacetylation[5, 9]
307WDLRRLCKTVGATALubiquitination[3, 4, 5, 6, 10]
348VVVFKHEKEDGAISTacetylation[9]
381DDGVNTFKVLTRDKRacetylation[5, 9, 11, 12]
381DDGVNTFKVLTRDKRubiquitination[1, 2, 3, 4, 5, 6, 8]
402ATEIELAKQITSYGEubiquitination[2, 4, 5, 6]
420GLEQYAIKKFAEAFEubiquitination[4]
421LEQYAIKKFAEAFEAubiquitination[1, 2, 3, 4, 5, 6, 8]
440LAENSGVKANEVISKubiquitination[1, 3, 4, 5]
447KANEVISKLYAVHQEacetylation[11]
447KANEVISKLYAVHQEubiquitination[4, 5, 6, 8]
509VDQIIMAKPAGGPKPacetylation[5, 9]
509VDQIIMAKPAGGPKPubiquitination[2, 4, 5, 6]
515AKPAGGPKPPSGKKDubiquitination[4, 5, 8]
520GPKPPSGKKDWDDDQubiquitination[3, 8]
521PKPPSGKKDWDDDQNubiquitination[1, 3, 5, 8, 10]
Reference
 [1] Systematic and quantitative assessment of the ubiquitin-modified proteome.
 Kim W, Bennett EJ, Huttlin EL, Guo A, Li J, Possemato A, Sowa ME, Rad R, Rush J, Comb MJ, Harper JW, Gygi SP.
 Mol Cell. 2011 Oct 21;44(2):325-40. [PMID: 21906983]
 [2] Global identification of modular cullin-RING ligase substrates.
 Emanuele MJ, Elia AE, Xu Q, Thoma CR, Izhar L, Leng Y, Guo A, Chen YN, Rush J, Hsu PW, Yen HC, Elledge SJ.
 Cell. 2011 Oct 14;147(2):459-74. [PMID: 21963094]
 [3] Methods for quantification of in vivo changes in protein ubiquitination following proteasome and deubiquitinase inhibition.
 Udeshi ND, Mani DR, Eisenhaure T, Mertins P, Jaffe JD, Clauser KR, Hacohen N, Carr SA.
 Mol Cell Proteomics. 2012 May;11(5):148-59. [PMID: 22505724]
 [4] Refined preparation and use of anti-diglycine remnant (K-ε-GG) antibody enables routine quantification of 10,000s of ubiquitination sites in single proteomics experiments.
 Udeshi ND, Svinkina T, Mertins P, Kuhn E, Mani DR, Qiao JW, Carr SA.
 Mol Cell Proteomics. 2013 Mar;12(3):825-31. [PMID: 23266961]
 [5] Integrated proteomic analysis of post-translational modifications by serial enrichment.
 Mertins P, Qiao JW, Patel J, Udeshi ND, Clauser KR, Mani DR, Burgess MW, Gillette MA, Jaffe JD, Carr SA.
 Nat Methods. 2013 Jul;10(7):634-7. [PMID: 23749302]
 [6] A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles.
 Wagner SA, Beli P, Weinert BT, Nielsen ML, Cox J, Mann M, Choudhary C.
 Mol Cell Proteomics. 2011 Oct;10(10):M111.013284. [PMID: 21890473]
 [7] Mass spectrometric analysis of lysine ubiquitylation reveals promiscuity at site level.
 Danielsen JM, Sylvestersen KB, Bekker-Jensen S, Szklarczyk D, Poulsen JW, Horn H, Jensen LJ, Mailand N, Nielsen ML.
 Mol Cell Proteomics. 2011 Mar;10(3):M110.003590. [PMID: 21139048]
 [8] Landscape of the PARKIN-dependent ubiquitylome in response to mitochondrial depolarization.
 Sarraf SA, Raman M, Guarani-Pereira V, Sowa ME, Huttlin EL, Gygi SP, Harper JW.
 Nature. 2013 Apr 18;496(7445):372-6. [PMID: 23503661]
 [9] Proteomic investigations of lysine acetylation identify diverse substrates of mitochondrial deacetylase sirt3.
 Sol EM, Wagner SA, Weinert BT, Kumar A, Kim HS, Deng CX, Choudhary C.
 PLoS One. 2012;7(12):e50545. [PMID: 23236377]
 [10] Proteome-wide identification of ubiquitylation sites by conjugation of engineered lysine-less ubiquitin.
 Oshikawa K, Matsumoto M, Oyamada K, Nakayama KI.
 J Proteome Res. 2012 Feb 3;11(2):796-807. [PMID: 22053931]
 [11] Proteomic investigations reveal a role for RNA processing factor THRAP3 in the DNA damage response.
 Beli P, Lukashchuk N, Wagner SA, Weinert BT, Olsen JV, Baskcomb L, Mann M, Jackson SP, Choudhary C.
 Mol Cell. 2012 Apr 27;46(2):212-25. [PMID: 22424773]
 [12] Monoclonal antibody cocktail as an enrichment tool for acetylome analysis.
 Shaw PG, Chaerkady R, Zhang Z, Davidson NE, Pandey A.
 Anal Chem. 2011 May 15;83(10):3623-6. [PMID: 21466224
Functional Description
  
Sequence Annotation
  
Keyword
 ATP-binding; Chaperone; Complete proteome; Cytoplasm; Nucleotide-binding; Reference proteome. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 529 AA 
Protein Sequence
MHFSGLEEAV YRNIQACKEL AQTTRTAYGP NGMNKMVINH LEKLFVTNDA ATILRELEVQ 60
HPAAKMIVMA SHMQEQEVGD GTNFVLVFAG ALLELAEELL RIGLSVSEVI EGYEIACRKA 120
HEILPNLVCC SAKNLRDIDE VSSLLRTSIM SKQYGNEVFL AKLIAQACVS IFPDSGHFNV 180
DNIRVCKILG SGISSSSVLH GMVFKKETEG DVTSVKDAKI AVYSCPFDGM ITETKGTVLI 240
KTAEELMNFS KGEENLMDAQ VKAIADTGAN VVVTGGKVAD MALHYANKYN IMLVRLNSKW 300
DLRRLCKTVG ATALPRLTPP VLEEMGHCDS VYLSEVGDTQ VVVFKHEKED GAISTIVLRG 360
STDNLMDDIE RAVDDGVNTF KVLTRDKRLV PGGGATEIEL AKQITSYGET CPGLEQYAIK 420
KFAEAFEAIP RALAENSGVK ANEVISKLYA VHQEGNKNVG LDIEAEVPAV KDMLEAGILD 480
TYLGKYWAIK LATNAAVTVL RVDQIIMAKP AGGPKPPSGK KDWDDDQND 529 
Gene Ontology
 GO:0016235; C:aggresome; IDA:HPA.
 GO:0005737; C:cytoplasm; IDA:HPA.
 GO:0045111; C:intermediate filament cytoskeleton; IDA:HPA.
 GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
 GO:0006457; P:protein folding; IEA:InterPro. 
Interpro
 IPR012721; Chap_CCT_theta.
 IPR017998; Chaperone_TCP-1.
 IPR002194; Chaperonin_TCP-1_CS.
 IPR002423; Cpn60/TCP-1.
 IPR027409; GroEL-like_apical_dom.
 IPR027413; GROEL-like_equatorial.
 IPR027410; TCP-1-like_intermed. 
Pfam
 PF00118; Cpn60_TCP1 
SMART
  
PROSITE
 PS00750; TCP1_1
 PS00751; TCP1_2
 PS00995; TCP1_3 
PRINTS
 PR00304; TCOMPLEXTCP1.