CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-005404
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Mitochondrial protein import protein MAS5 
Protein Synonyms/Alias
 Yeast dnaJ protein 1 
Gene Name
 YDJ1 
Gene Synonyms/Alias
 MAS5; YNL064C; N2418; YNL2418C 
Created Date
 July 27, 2013 
Organism
 Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) 
NCBI Taxa ID
 559292 
Lysine Modification
Position
Peptide
Type
References
23TATDVEIKKAYRKCAacetylation[1]
23TATDVEIKKAYRKCAubiquitination[2, 3]
37ALKYHPDKNPSEEAAacetylation[1]
37ALKYHPDKNPSEEAAubiquitination[3]
46PSEEAAEKFKEASAAacetylation[1]
117PQRGKDIKHEISASLacetylation[1]
129ASLEELYKGRTAKLAacetylation[1]
134LYKGRTAKLALNKQIubiquitination[3]
139TAKLALNKQILCKECubiquitination[3]
144LNKQILCKECEGRGGubiquitination[3]
158GKKGAVKKCTSCNGQubiquitination[3]
198TGDIIDPKDRCKSCNubiquitination[2, 3]
314MRKVIEGKGMPIPKYubiquitination[3]
320GKGMPIPKYGGYGNLacetylation[1]
334LIIKFTIKFPENHFTacetylation[1]
348TSEENLKKLEEILPPubiquitination[3]
363RIVPAIPKKATVDECubiquitination[3]
364IVPAIPKKATVDECVubiquitination[3]
Reference
 [1] Proteome-wide analysis of lysine acetylation suggests its broad regulatory scope in Saccharomyces cerevisiae.
 Henriksen P, Wagner SA, Weinert BT, Sharma S, Bacinskaja G, Rehman M, Juffer AH, Walther TC, Lisby M, Choudhary C.
 Mol Cell Proteomics. 2012 Nov;11(11):1510-22. [PMID: 22865919]
 [2] Sites of ubiquitin attachment in Saccharomyces cerevisiae.
 Starita LM, Lo RS, Eng JK, von Haller PD, Fields S.
 Proteomics. 2012 Jan;12(2):236-40. [PMID: 22106047]
 [3] Global analysis of phosphorylation and ubiquitylation cross-talk in protein degradation.
 Swaney DL, Beltrao P, Starita L, Guo A, Rush J, Fields S, Krogan NJ, VillĂ©n J.
 Nat Methods. 2013 Jul;10(7):676-82. [PMID: 23749301
Functional Description
 Probably involved in mitochondrial protein import. Is also required for efficient translocation of pre-pro-alpha-factor. Involved in heme regulation of HAP1, as a component of the high- molecular-weight (HMC) complex. 
Sequence Annotation
 DOMAIN 4 72 J.
 REPEAT 143 150 CXXCXGXG motif.
 REPEAT 159 166 CXXCXGXG motif.
 REPEAT 185 192 CXXCXGXG motif.
 REPEAT 201 208 CXXCXGXG motif.
 ZN_FING 130 213 CR-type.
 REGION 1 172 Necessary for HAP1 repression in the
 REGION 135 137 Substrate binding.
 REGION 215 216 Substrate binding.
 REGION 247 249 Substrate binding.
 METAL 143 143 Zinc 1.
 METAL 146 146 Zinc 1.
 METAL 159 159 Zinc 2.
 METAL 162 162 Zinc 2.
 METAL 185 185 Zinc 2.
 METAL 188 188 Zinc 2.
 METAL 201 201 Zinc 1.
 METAL 204 204 Zinc 1.
 BINDING 116 116 Substrate; via amide nitrogen.
 MOD_RES 406 406 Cysteine methyl ester (Probable).
 LIPID 406 406 S-farnesyl cysteine.  
Keyword
 3D-structure; Chaperone; Complete proteome; Cytoplasm; Lipoprotein; Metal-binding; Methylation; Prenylation; Protein transport; Reference proteome; Repeat; Stress response; Transport; Zinc; Zinc-finger. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 409 AA 
Protein Sequence
MVKETKFYDI LGVPVTATDV EIKKAYRKCA LKYHPDKNPS EEAAEKFKEA SAAYEILSDP 60
EKRDIYDQFG EDGLSGAGGA GGFPGGGFGF GDDIFSQFFG AGGAQRPRGP QRGKDIKHEI 120
SASLEELYKG RTAKLALNKQ ILCKECEGRG GKKGAVKKCT SCNGQGIKFV TRQMGPMIQR 180
FQTECDVCHG TGDIIDPKDR CKSCNGKKVE NERKILEVHV EPGMKDGQRI VFKGEADQAP 240
DVIPGDVVFI VSERPHKSFK RDGDDLVYEA EIDLLTAIAG GEFALEHVSG DWLKVGIVPG 300
EVIAPGMRKV IEGKGMPIPK YGGYGNLIIK FTIKFPENHF TSEENLKKLE EILPPRIVPA 360
IPKKATVDEC VLADFDPAKY NRTRASRGGA NYDSDEEEQG GEGVQCASQ 409 
Gene Ontology
 GO:0048471; C:perinuclear region of cytoplasm; IDA:SGD.
 GO:0072380; C:TRC complex; IDA:SGD.
 GO:0005524; F:ATP binding; IEA:InterPro.
 GO:0001671; F:ATPase activator activity; IDA:SGD.
 GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
 GO:0051082; F:unfolded protein binding; IDA:SGD.
 GO:0006458; P:'de novo' protein folding; IMP:SGD.
 GO:0030433; P:ER-associated protein catabolic process; IMP:SGD.
 GO:0042026; P:protein refolding; IDA:SGD.
 GO:0045047; P:protein targeting to ER; IMP:SGD.
 GO:0006626; P:protein targeting to mitochondrion; IMP:SGD.
 GO:0009408; P:response to heat; IEA:InterPro. 
Interpro
 IPR012724; DnaJ.
 IPR002939; DnaJ_C.
 IPR001623; DnaJ_domain.
 IPR018253; DnaJ_domain_CS.
 IPR008971; HSP40/DnaJ_pept-bd.
 IPR001305; HSP_DnaJ_Cys-rich_dom. 
Pfam
 PF00226; DnaJ
 PF01556; DnaJ_C
 PF00684; DnaJ_CXXCXGXG 
SMART
 SM00271; DnaJ 
PROSITE
 PS00636; DNAJ_1
 PS50076; DNAJ_2
 PS51188; ZF_CR 
PRINTS
 PR00625; JDOMAIN.