CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-005013
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Dihydrolipoyl dehydrogenase 
Protein Synonyms/Alias
 Dihydrolipoamide dehydrogenase; E3 component of pyruvate complex; S complex, 50 kDa subunit 
Gene Name
 pdhD 
Gene Synonyms/Alias
 aceD; citL; BSU14610 
Created Date
 July 27, 2013 
Organism
 Bacillus subtilis (strain 168) 
NCBI Taxa ID
 224308 
Lysine Modification
Position
Peptide
Type
References
108GGVAGLLKGNKVDVVacetylation[1]
173STGALALKEIPKKLVacetylation[1]
298MTDRGIVKTDKQCRTacetylation[1]
Reference
 [1] The acetylproteome of Gram-positive model bacterium Bacillus subtilis.
 Kim D, Yu BJ, Kim JA, Lee YJ, Choi SG, Kang S, Pan JG.
 Proteomics. 2013 May;13(10-11):1726-36. [PMID: 23468065
Functional Description
 Catalyzes the oxidation of dihydrolipoamide to lipoamide. 
Sequence Annotation
 NP_BIND 39 47 FAD (By similarity).
 NP_BIND 183 187 NAD (By similarity).
 NP_BIND 272 275 NAD (By similarity).
 ACT_SITE 447 447 Proton acceptor (By similarity).
 BINDING 56 56 FAD (By similarity).
 BINDING 119 119 FAD; via amide nitrogen and carbonyl
 BINDING 206 206 NAD (By similarity).
 BINDING 315 315 FAD (By similarity).
 BINDING 323 323 FAD; via amide nitrogen (By similarity).
 DISULFID 47 52 Redox-active (By similarity).  
Keyword
 Complete proteome; Cytoplasm; Disulfide bond; FAD; Flavoprotein; Glycolysis; NAD; Oxidoreductase; Redox-active center; Reference proteome. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 470 AA 
Protein Sequence
MVVGDFPIET DTLVIGAGPG GYVAAIRAAQ LGQKVTVVEK ATLGGVCLNV GCIPSKALIN 60
AGHRYENAKH SDDMGITAEN VTVDFTKVQE WKASVVNKLT GGVAGLLKGN KVDVVKGEAY 120
FVDSNSVRVM DENSAQTYTF KNAIIATGSR PIELPNFKYS ERVLNSTGAL ALKEIPKKLV 180
VIGGGYIGTE LGTAYANFGT ELVILEGGDE ILPGFEKQMS SLVTRRLKKK GNVEIHTNAM 240
AKGVEERPDG VTVTFEVKGE EKTVDADYVL ITVGRRPNTD ELGLEQVGIE MTDRGIVKTD 300
KQCRTNVPNI YAIGDIIEGP PLAHKASYEG KIAAEAIAGE PAEIDYLGIP AVVFSEPELA 360
SVGYTEAQAK EEGLDIVAAK FPFAANGRAL SLNETDGFMK LITRKEDGLV IGAQIAGASA 420
SDMISELSLA IEGGMTAEDI AMTIHAHPTL GEITMEAAEV AIGSPIHIVK 470 
Gene Ontology
 GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
 GO:0004148; F:dihydrolipoyl dehydrogenase activity; IEA:EC.
 GO:0050660; F:flavin adenine dinucleotide binding; IEA:InterPro.
 GO:0045454; P:cell redox homeostasis; IEA:InterPro.
 GO:0006096; P:glycolysis; IEA:UniProtKB-KW. 
Interpro
 IPR016156; FAD/NAD-linked_Rdtase_dimer.
 IPR013027; FAD_pyr_nucl-diS_OxRdtase.
 IPR006258; Lipoamide_DH.
 IPR004099; Pyr_nucl-diS_OxRdtase_dimer.
 IPR023753; Pyr_nucl-diS_OxRdtase_FAD/NAD.
 IPR012999; Pyr_OxRdtase_I_AS.
 IPR001327; Pyr_OxRdtase_NAD-bd_dom. 
Pfam
 PF00070; Pyr_redox
 PF07992; Pyr_redox_2
 PF02852; Pyr_redox_dim 
SMART
  
PROSITE
 PS00076; PYRIDINE_REDOX_1 
PRINTS
 PR00368; FADPNR.