CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-010293
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Pyridoxamine kinase 
Protein Synonyms/Alias
 PM kinase 
Gene Name
 pdxY 
Gene Synonyms/Alias
 ydgS; b1636; JW1628 
Created Date
 July 27, 2013 
Organism
 Escherichia coli (strain K12) 
NCBI Taxa ID
 83333 
Lysine Modification
Position
Peptide
Type
References
286EHYFSATKL******acetylation[1]
Reference
 [1] Acetyl-Phosphate Is a Critical Determinant of Lysine Acetylation in E. coli.
 Weinert BT, Iesmantavicius V, Wagner SA, Schölz C, Gummesson B, Beli P, Nyström T, Choudhary C.
 Mol Cell. 2013 Jul 25;51(2):265-72. [PMID: 23830618
Functional Description
 Phosphorylates B6 vitamers; functions in a salvage pathway. Uses pyridoxamine, but has negligible activity toward pyridoxal and pyridoxine as substrates. 
Sequence Annotation
 NP_BIND 182 183 ATP (By similarity).
 NP_BIND 208 223 ATP (By similarity).
 BINDING 10 10 Substrate (By similarity).
 BINDING 45 45 Substrate (By similarity).
 BINDING 224 224 Substrate (By similarity).  
Keyword
 3D-structure; ATP-binding; Complete proteome; Kinase; Metal-binding; Nucleotide-binding; Reference proteome; Transferase; Zinc. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 287 AA 
Protein Sequence
MMKNILAIQS HVVYGHAGNS AAEFPMRRLG ANVWPLNTVQ FSNHTQYGKW TGCVMPPSHL 60
TEIVQGIAAI DKLHTCDAVL SGYLGSAEQG EHILGIVRQV KAANPQAKYF CDPVMGHPEK 120
GCIVAPGVAE FHVRHGLPAS DIIAPNLVEL EILCEHAVNN VEEAVLAARE LIAQGPQIVL 180
VKHLARAGYS RDRFEMLLVT ADEAWHISRP LVDFGMRQPV GVGDVTSGLL LVKLLQGATL 240
QEALEHVTAA VYEIMVTTKA MQEYELQVVA AQDRIAKPEH YFSATKL 287 
Gene Ontology
 GO:0005524; F:ATP binding; IEA:HAMAP.
 GO:0004340; F:glucokinase activity; IEA:HAMAP.
 GO:0008478; F:pyridoxal kinase activity; IDA:EcoliWiki.
 GO:0008270; F:zinc ion binding; IEA:HAMAP.
 GO:0051156; P:glucose 6-phosphate metabolic process; IEA:GOC.
 GO:0006096; P:glycolysis; IEA:HAMAP.
 GO:0009443; P:pyridoxal 5'-phosphate salvage; IMP:EcoliWiki.
 GO:0042817; P:pyridoxal metabolic process; IMP:EcoliWiki.
 GO:0042819; P:vitamin B6 biosynthetic process; IMP:EcoliWiki. 
Interpro
 IPR013749; HMP-P_kinase-1.
 IPR004625; PyrdxlP_synth_PyrdxlKinase.
 IPR023685; Pyridoxal_kinase_PdxY. 
Pfam
 PF08543; Phos_pyr_kin 
SMART
  
PROSITE
  
PRINTS