CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-024413
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 UV excision repair protein RAD23 homolog A 
Protein Synonyms/Alias
  
Gene Name
 RAD23A 
Gene Synonyms/Alias
  
Created Date
 July 27, 2013 
Organism
 Bos taurus (Bovine) 
NCBI Taxa ID
 9913 
Lysine Modification
Position
Peptide
Type
References
16TLQQQTFKIRMEPDEubiquitination[1]
Reference
 [1] Synaptic protein ubiquitination in rat brain revealed by antibody-based ubiquitome analysis.
 Na CH, Jones DR, Yang Y, Wang X, Xu Y, Peng J.
 J Proteome Res. 2012 Sep 7;11(9):4722-32. [PMID: 22871113
Functional Description
 Multiubiquitin chain receptor involved in modulation of proteasomal degradation. Binds to 'Lys-48'-linked polyubiquitin chains in a length-dependent manner and with a lower affinity to 'Lys-63'-linked polyubiquitin chains. Proposed to be capable to bind simultaneously to the 26S proteasome and to polyubiquitinated substrates and to deliver ubiquitinated proteins to the proteasome (By similarity). 
Sequence Annotation
 DOMAIN 1 81 Ubiquitin-like.
 DOMAIN 161 201 UBA 1.
 DOMAIN 317 357 UBA 2.
 MOD_RES 123 123 Phosphoserine (By similarity).
 MOD_RES 133 133 Phosphoserine (By similarity).
 MOD_RES 205 205 Phosphoserine (By similarity).
 MOD_RES 294 294 Phosphoserine (By similarity).
 MOD_RES 356 356 Phosphoserine (By similarity).
 CROSSLNK 122 122 Glycyl lysine isopeptide (Lys-Gly)  
Keyword
 Complete proteome; DNA damage; DNA repair; Isopeptide bond; Nucleus; Phosphoprotein; Proteasome; Reference proteome; Repeat; Ubl conjugation. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 362 AA 
Protein Sequence
MAVTITLKTL QQQTFKIRME PDETVKVLKE KIEAEKGRDA FPVAGQKLIY AGKILSDDVP 60
IRDYRIDEKN FVVVMVTKAK TSPGTSVPSE ASPTATPESS TSFPSAPASG MSHPPPTARE 120
DKSPSEESAP TTSPESVSGS VPSSGSGGRE EDAASTLVTG SEYETMLTEI MSMGYERERV 180
VAALRASYNN PHRAVEYLLT GIPGSPEPEH GSVQESQVSE QPSTEAGENP LEFLRDQPQF 240
QNMRQVIQQN PALLPALLQQ LGQENPQLLQ QISRHQEQFI QMLNEPPGEL VDISDVEGEV 300
GAIGEEAPQM NYIQVTPQEK EAIERLKALG FPESLVIQAY FACEKNENLA ANFLLSQNFD 360
DE 362 
Gene Ontology
 GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
 GO:0000502; C:proteasome complex; IEA:UniProtKB-KW.
 GO:0003684; F:damaged DNA binding; IEA:InterPro.
 GO:0006289; P:nucleotide-excision repair; IEA:InterPro.
 GO:0045070; P:positive regulation of viral genome replication; IEA:Compara.
 GO:0043161; P:proteasomal ubiquitin-dependent protein catabolic process; IEA:InterPro.
 GO:0032434; P:regulation of proteasomal ubiquitin-dependent protein catabolic process; IEA:Compara. 
Interpro
 IPR004806; Rad23.
 IPR006636; STI1_HS-bd.
 IPR009060; UBA-like.
 IPR000449; UBA/transl_elong_EF1B_N.
 IPR015940; UBA/transl_elong_EF1B_N_euk.
 IPR000626; Ubiquitin.
 IPR019955; Ubiquitin_supergroup.
 IPR015360; XPC-bd. 
Pfam
 PF00627; UBA
 PF00240; ubiquitin
 PF09280; XPC-binding 
SMART
 SM00727; STI1
 SM00165; UBA
 SM00213; UBQ 
PROSITE
 PS50030; UBA
 PS00299; UBIQUITIN_1
 PS50053; UBIQUITIN_2 
PRINTS
 PR01839; RAD23PROTEIN.