Tag | Content |
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CPLM ID | CPLM-018025 |
UniProt Accession | |
Genbank Protein ID | |
Genbank Nucleotide ID | |
Protein Name | ATP-dependent RNA helicase DDX54 |
Protein Synonyms/Alias | ATP-dependent RNA helicase DP97; DEAD box RNA helicase 97 kDa; DEAD box protein 54 |
Gene Name | DDX54 |
Gene Synonyms/Alias | |
Created Date | July 27, 2013 |
Organism | Homo sapiens (Human) |
NCBI Taxa ID | 9606 |
Lysine Modification | Position | Peptide | Type | References |
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418 | INYSFPAKGKLFLHR | ubiquitination | [1] | 420 | YSFPAKGKLFLHRVG | ubiquitination | [1] | 468 | LTLARPLKEPSGVAG | ubiquitination | [1] |
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Reference | [1] Refined preparation and use of anti-diglycine remnant (K-ε-GG) antibody enables routine quantification of 10,000s of ubiquitination sites in single proteomics experiments. Udeshi ND, Svinkina T, Mertins P, Kuhn E, Mani DR, Qiao JW, Carr SA. Mol Cell Proteomics. 2013 Mar;12(3):825-31. [ PMID: 23266961] |
Functional Description | Has RNA-dependent ATPase activity. Represses the transcriptional activity of nuclear receptors. |
Sequence Annotation | DOMAIN 127 299 Helicase ATP-binding. DOMAIN 326 473 Helicase C-terminal. NP_BIND 140 147 ATP (By similarity). REGION 605 647 Interaction with nuclear receptors. MOTIF 96 124 Q motif. MOTIF 247 250 DEAD box. MOD_RES 34 34 Phosphoserine. MOD_RES 39 39 Phosphoserine. MOD_RES 41 41 Phosphoserine. MOD_RES 75 75 Phosphoserine. MOD_RES 644 644 Phosphoserine. MOD_RES 696 696 Phosphoserine. MOD_RES 698 698 Phosphoserine. MOD_RES 782 782 Phosphoserine. MOD_RES 788 788 Phosphoserine. |
Keyword | Alternative splicing; ATP-binding; Complete proteome; Helicase; Hydrolase; Nucleotide-binding; Nucleus; Phosphoprotein; Polymorphism; Reference proteome; RNA-binding; Transcription; Transcription regulation. |
Sequence Source | UniProt (SWISSPROT/TrEMBL); GenBank; EMBL |
Protein Length | 881 AA |
Protein Sequence | MAADKGPAAG PRSRAAMAQW RKKKGLRKRR GAASQARGSD SEDGEFEIQA EDDARARKLG 60 PGRPLPTFPT SECTSDVEPD TREMVRAQNK KKKKSGGFQS MGLSYPVFKG IMKKGYKVPT 120 PIQRKTIPVI LDGKDVVAMA RTGSGKTACF LLPMFERLKT HSAQTGARAL ILSPTRELAL 180 QTLKFTKELG KFTGLKTALI LGGDRMEDQF AALHENPDII IATPGRLVHV AVEMSLKLQS 240 VEYVVFDEAD RLFEMGFAEQ LQEIIARLPG GHQTVLFSAT LPKLLVEFAR AGLTEPVLIR 300 LDVDTKLNEQ LKTSFFLVRE DTKAAVLLHL LHNVVRPQDQ TVVFVATKHH AEYLTELLTT 360 QRVSCAHIYS ALDPTARKIN LAKFTLGKCS TLIVTDLAAR GLDIPLLDNV INYSFPAKGK 420 LFLHRVGRVA RAGRSGTAYS LVAPDEIPYL LDLHLFLGRS LTLARPLKEP SGVAGVDGML 480 GRVPQSVVDE EDSGLQSTLE ASLELRGLAR VADNAQQQYV RSRPAPSPES IKRAKEMDLV 540 GLGLHPLFSS RFEEEELQRL RLVDSIKNYR SRATIFEINA SSRDLCSQVM RAKRQKDRKA 600 IARFQQGQQG RQEQQEGPVG PAPSRPALQE KQPEKEEEEE AGESVEDIFS EVVGRKRQRS 660 GPNRGAKRRR EEARQRDQEF YIPYRPKDFD SERGLSISGE GGAFEQQAAG AVLDLMGDEA 720 QNLTRGRQQL KWDRKKKRFV GQSGQEDKKK IKTESGRYIS SSYKRDLYQK WKQKQKIDDR 780 DSDEEGASDR RGPERRGGKR DRGQGASRPH APGTPAGRVR PELKTKQQIL KQRRRAQKLH 840 FLQRGGLKQL SARNRRRVQE LQQGAFGRGA RSKKGKMRKR M 881 |
Gene Ontology | GO:0005730; C:nucleolus; IDA:UniProtKB. GO:0005524; F:ATP binding; IEA:UniProtKB-KW. GO:0004004; F:ATP-dependent RNA helicase activity; IDA:UniProtKB. GO:0030331; F:estrogen receptor binding; IDA:UniProtKB. GO:0003723; F:RNA binding; IEA:UniProtKB-KW. GO:0003714; F:transcription corepressor activity; IDA:UniProtKB. GO:0030520; P:intracellular estrogen receptor signaling pathway; TAS:UniProtKB. GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW. GO:0006396; P:RNA processing; IDA:UniProtKB. GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW. |
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