CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-021294
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Synaptotagmin-4 
Protein Synonyms/Alias
 Synaptotagmin IV; SytIV 
Gene Name
 SYT4 
Gene Synonyms/Alias
 KIAA1342 
Created Date
 July 27, 2013 
Organism
 Homo sapiens (Human) 
NCBI Taxa ID
 9606 
Lysine Modification
Position
Peptide
Type
References
58YKFVHVLKGVDIYPEubiquitination[1]
111NFPKTNLKPGSPSDLubiquitination[1]
316LKARHLPKSDVSGLSubiquitination[1]
Reference
 [1] Landscape of the PARKIN-dependent ubiquitylome in response to mitochondrial depolarization.
 Sarraf SA, Raman M, Guarani-Pereira V, Sowa ME, Huttlin EL, Gygi SP, Harper JW.
 Nature. 2013 Apr 18;496(7445):372-6. [PMID: 23503661
Functional Description
 May be involved in Ca(2+)-dependent exocytosis of secretory vesicles through Ca(2+) and phospholipid binding to the C2 domain or may serve as Ca(2+) sensors in the process of vesicular trafficking and exocytosis. 
Sequence Annotation
 DOMAIN 155 258 C2 1.
 DOMAIN 289 392 C2 2.
 REGION 147 297 Phospholipid binding (Probable).
 METAL 184 184 Calcium 1 (By similarity).
 METAL 184 184 Calcium 2 (By similarity).
 METAL 191 191 Calcium 1 (By similarity).
 METAL 245 245 Calcium 1; via carbonyl oxygen (By
 METAL 246 246 Calcium 1 (By similarity).
 METAL 246 246 Calcium 2 (By similarity).
 METAL 246 246 Calcium 3 (By similarity).
 METAL 249 249 Calcium 3 (By similarity).
 METAL 252 252 Calcium 2 (By similarity).
 METAL 252 252 Calcium 3 (By similarity).  
Keyword
 3D-structure; Calcium; Cell junction; Complete proteome; Cytoplasmic vesicle; Membrane; Metal-binding; Polymorphism; Reference proteome; Repeat; Synapse; Transmembrane; Transmembrane helix. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 425 AA 
Protein Sequence
MAPITTSREE FDEIPTVVGI FSAFGLVFTV SLFAWICCQR KSSKSNKTPP YKFVHVLKGV 60
DIYPENLNSK KKFGADDKNE VKNKPAVPKN SLHLDLEKRD LNGNFPKTNL KPGSPSDLEN 120
ATPKLFLEGE KESVSPESLK SSTSLTSEEK QEKLGTLFFS LEYNFERKAF VVNIKEARGL 180
PAMDEQSMTS DPYIKMTILP EKKHKVKTRV LRKTLDPAFD ETFTFYGIPY TQIQELALHF 240
TILSFDRFSR DDIIGEVLIP LSGIELSEGK MLMNREIIKR NVRKSSGRGE LLISLCYQST 300
TNTLTVVVLK ARHLPKSDVS GLSDPYVKVN LYHAKKRISK KKTHVKKCTP NAVFNELFVF 360
DIPCEGLEDI SVEFLVLDSE RGSRNEVIGQ LVLGAAAEGT GGEHWKEICD YPRRQIAKWH 420
VLCDG 425 
Gene Ontology
 GO:0030054; C:cell junction; IEA:UniProtKB-KW.
 GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
 GO:0043005; C:neuron projection; IEA:Compara.
 GO:0048471; C:perinuclear region of cytoplasm; IEA:Compara.
 GO:0030672; C:synaptic vesicle membrane; IEA:UniProtKB-SubCell.
 GO:0005509; F:calcium ion binding; IEA:Compara.
 GO:0005215; F:transporter activity; IEA:InterPro.
 GO:0007269; P:neurotransmitter secretion; IEA:Compara. 
Interpro
 IPR000008; C2_Ca-dep.
 IPR008973; C2_Ca/lipid-bd_dom_CaLB.
 IPR018029; C2_membr_targeting.
 IPR001565; Synaptotagmin. 
Pfam
 PF00168; C2 
SMART
 SM00239; C2 
PROSITE
 PS50004; C2 
PRINTS
 PR00399; SYNAPTOTAGMN.