CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-005946
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Homoserine dehydrogenase 
Protein Synonyms/Alias
 HDH 
Gene Name
 HOM6 
Gene Synonyms/Alias
 YJR139C; J2132 
Created Date
 July 27, 2013 
Organism
 Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) 
NCBI Taxa ID
 559292 
Lysine Modification
Position
Peptide
Type
References
48AERSLISKDFSPLNVacetylation[1]
69ALAASTTKTLPLDDLacetylation[1]
69ALAASTTKTLPLDDLubiquitination[2]
81DDLIAHLKTSPKPVIacetylation[1]
117ISIATPNKKAFSSDLubiquitination[2]
118SIATPNKKAFSSDLAubiquitination[2]
199VKFSDVVKVAKKLGYacetylation[1]
203DVVKVAKKLGYTEPDubiquitination[2]
223NGLDVARKVTIVGRIubiquitination[2]
255PKPLESVKSADEFLEacetylation[1]
263SADEFLEKLSDYDKDacetylation[1]
269EKLSDYDKDLTQLKKacetylation[1]
283KEAATENKVLRFIGKacetylation[1]
283KEAATENKVLRFIGKubiquitination[2]
290KVLRFIGKVDVATKSubiquitination[2, 3]
296GKVDVATKSVSVGIEubiquitination[2]
304SVSVGIEKYDYSHPFacetylation[1]
304SVSVGIEKYDYSHPFubiquitination[2]
315SHPFASLKGSDNVISacetylation[1]
324SDNVISIKTKRYTNPubiquitination[2]
Reference
 [1] Proteome-wide analysis of lysine acetylation suggests its broad regulatory scope in Saccharomyces cerevisiae.
 Henriksen P, Wagner SA, Weinert BT, Sharma S, Bacinskaja G, Rehman M, Juffer AH, Walther TC, Lisby M, Choudhary C.
 Mol Cell Proteomics. 2012 Nov;11(11):1510-22. [PMID: 22865919]
 [2] Global analysis of phosphorylation and ubiquitylation cross-talk in protein degradation.
 Swaney DL, Beltrao P, Starita L, Guo A, Rush J, Fields S, Krogan NJ, VillĂ©n J.
 Nat Methods. 2013 Jul;10(7):676-82. [PMID: 23749301]
 [3] Sites of ubiquitin attachment in Saccharomyces cerevisiae.
 Starita LM, Lo RS, Eng JK, von Haller PD, Fields S.
 Proteomics. 2012 Jan;12(2):236-40. [PMID: 22106047
Functional Description
  
Sequence Annotation
 NP_BIND 11 18 NADP.
 ACT_SITE 223 223 Proton donor (Potential).
 BINDING 93 93 NADP.
 BINDING 117 117 NADP.
 BINDING 208 208 Substrate.  
Keyword
 3D-structure; Amino-acid biosynthesis; Branched-chain amino acid biosynthesis; Complete proteome; Direct protein sequencing; Isoleucine biosynthesis; Methionine biosynthesis; NADP; Oxidoreductase; Reference proteome; Threonine biosynthesis. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 359 AA 
Protein Sequence
MSTKVVNVAV IGAGVVGSAF LDQLLAMKST ITYNLVLLAE AERSLISKDF SPLNVGSDWK 60
AALAASTTKT LPLDDLIAHL KTSPKPVILV DNTSSAYIAG FYTKFVENGI SIATPNKKAF 120
SSDLATWKAL FSNKPTNGFV YHEATVGAGL PIISFLREII QTGDEVEKIE GIFSGTLSYI 180
FNEFSTSQAN DVKFSDVVKV AKKLGYTEPD PRDDLNGLDV ARKVTIVGRI SGVEVESPTS 240
FPVQSLIPKP LESVKSADEF LEKLSDYDKD LTQLKKEAAT ENKVLRFIGK VDVATKSVSV 300
GIEKYDYSHP FASLKGSDNV ISIKTKRYTN PVVIQGAGAG AAVTAAGVLG DVIKIAQRL 359 
Gene Ontology
 GO:0005737; C:cytoplasm; IDA:SGD.
 GO:0005634; C:nucleus; IDA:SGD.
 GO:0004412; F:homoserine dehydrogenase activity; IDA:SGD.
 GO:0050661; F:NADP binding; IEA:InterPro.
 GO:0009090; P:homoserine biosynthetic process; IMP:SGD.
 GO:0009097; P:isoleucine biosynthetic process; IEA:UniProtKB-KW.
 GO:0009086; P:methionine biosynthetic process; IMP:SGD.
 GO:0009088; P:threonine biosynthetic process; IMP:SGD. 
Interpro
 IPR005106; Asp/hSer_DH_NAD-bd.
 IPR001342; HDH_cat.
 IPR019811; HDH_CS.
 IPR022697; HDH_short.
 IPR016040; NAD(P)-bd_dom. 
Pfam
 PF00742; Homoserine_dh
 PF03447; NAD_binding_3 
SMART
  
PROSITE
 PS01042; HOMOSER_DHGENASE 
PRINTS