CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-019898
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Aconitate hydratase, mitochondrial 
Protein Synonyms/Alias
 Aconitase; Citrate hydro-lyase 
Gene Name
 Aco2 
Gene Synonyms/Alias
  
Created Date
 July 27, 2013 
Organism
 Mus musculus (Mouse) 
NCBI Taxa ID
 10090 
Lysine Modification
Position
Peptide
Type
References
31SVLCQRAKVAMSHFEacetylation[1, 2]
31SVLCQRAKVAMSHFEsuccinylation[2]
31SVLCQRAKVAMSHFEubiquitination[3]
50IRYDLLEKNINIVRKacetylation[1, 2, 4, 5, 6, 7, 8, 9, 10, 11, 12]
50IRYDLLEKNINIVRKsuccinylation[2]
50IRYDLLEKNINIVRKubiquitination[3]
138EAQVGGEKDLRRAKDacetylation[1, 2, 11, 12]
138EAQVGGEKDLRRAKDsuccinylation[2]
144EKDLRRAKDINQEVYacetylation[1, 2, 7, 8, 11, 12]
144EKDLRRAKDINQEVYsuccinylation[2]
144EKDLRRAKDINQEVYsuccinylation[2]
144EKDLRRAKDINQEVYubiquitination[3, 13]
225AGIPWELKCPKVIGVacetylation[7]
228PWELKCPKVIGVKLTacetylation[2, 7, 11]
228PWELKCPKVIGVKLTsuccinylation[2]
233CPKVIGVKLTGSLSGacetylation[2, 7, 11]
233CPKVIGVKLTGSLSGsuccinylation[2]
245LSGWTSPKDVILKVAacetylation[8]
401GRSAAVAKQALAHGLacetylation[1, 2, 7]
401GRSAAVAKQALAHGLsuccinylation[2]
401GRSAAVAKQALAHGLubiquitination[3]
409QALAHGLKCKSQFTIacetylation[1, 11]
411LAHGLKCKSQFTITPacetylation[1, 2, 7, 12]
411LAHGLKCKSQFTITPsuccinylation[2]
465KDIKKGEKNTIVTSYacetylation[1, 12]
517ETDFLTGKDGKKFKLacetylation[1, 2, 7, 9, 11, 12]
517ETDFLTGKDGKKFKLsuccinylation[2]
517ETDFLTGKDGKKFKLubiquitination[3]
520FLTGKDGKKFKLEAPacetylation[1]
521LTGKDGKKFKLEAPDacetylation[1, 7, 10]
523GKDGKKFKLEAPDADacetylation[1, 2, 5, 7, 8, 9, 11, 12]
523GKDGKKFKLEAPDADsuccinylation[2]
549DTYQHPPKDSSGQRVacetylation[1, 2, 11]
549DTYQHPPKDSSGQRVsuccinylation[2]
549DTYQHPPKDSSGQRVubiquitination[3]
573QLLEPFDKWDGKDLEacetylation[1, 2, 7, 12]
573QLLEPFDKWDGKDLEsuccinylation[2]
573QLLEPFDKWDGKDLEubiquitination[3]
577PFDKWDGKDLEDLQIacetylation[2, 7]
577PFDKWDGKDLEDLQIsuccinylation[2]
591ILIKVKGKCTTDHISacetylation[2, 11]
591ILIKVKGKCTTDHISsuccinylation[2]
605SAAGPWLKFRGHLDNacetylation[1, 2, 5, 11, 12]
605SAAGPWLKFRGHLDNsuccinylation[2]
628AINIENGKANSVRNAacetylation[2, 11, 12]
628AINIENGKANSVRNAsuccinylation[2]
689GGRAIITKSFARIHEacetylation[1, 2, 5, 8, 11, 12]
689GGRAIITKSFARIHEsuccinylation[2]
700RIHETNLKKQGLLPLacetylation[11, 12]
701IHETNLKKQGLLPLTacetylation[8]
701IHETNLKKQGLLPLTubiquitination[3]
717ADPSDYNKIHPVDKLacetylation[12]
723NKIHPVDKLTIQGLKacetylation[1, 2, 7, 11, 12]
723NKIHPVDKLTIQGLKsuccinylation[2]
723NKIHPVDKLTIQGLKubiquitination[3]
730KLTIQGLKDFAPGKPacetylation[1, 2, 7, 8, 11, 12]
730KLTIQGLKDFAPGKPsuccinylation[2]
736LKDFAPGKPLKCVIKacetylation[1, 2, 7, 8, 11, 12]
736LKDFAPGKPLKCVIKsuccinylation[2]
736LKDFAPGKPLKCVIKsuccinylation[2]
736LKDFAPGKPLKCVIKubiquitination[3]
739FAPGKPLKCVIKHPNacetylation[1, 7, 11, 12]
743KPLKCVIKHPNGTQEacetylation[1, 10, 11, 12]
Reference
 [1] Calorie restriction and SIRT3 trigger global reprogramming of the mitochondrial protein acetylome.
 Hebert AS, Dittenhafer-Reed KE, Yu W, Bailey DJ, Selen ES, Boersma MD, Carson JJ, Tonelli M, Balloon AJ, Higbee AJ, Westphall MS, Pagliarini DJ, Prolla TA, Assadi-Porter F, Roy S, Denu JM, Coon JJ.
 Mol Cell. 2013 Jan 10;49(1):186-99. [PMID: 23201123]
 [2] SIRT5-Mediated Lysine Desuccinylation Impacts Diverse Metabolic Pathways.
 Park J, Chen Y, Tishkoff DX, Peng C, Tan M, Dai L, Xie Z, Zhang Y, Zwaans BM, Skinner ME, Lombard DB, Zhao Y.
 Mol Cell. 2013 Jun 27;50(6):919-30. [PMID: 23806337]
 [3] Proteomic analyses reveal divergent ubiquitylation site patterns in murine tissues.
 Wagner SA, Beli P, Weinert BT, Schölz C, Kelstrup CD, Young C, Nielsen ML, Olsen JV, Brakebusch C, Choudhary C.
 Mol Cell Proteomics. 2012 Dec;11(12):1578-85. [PMID: 22790023]
 [4] Substrate and functional diversity of lysine acetylation revealed by a proteomics survey.
 Kim SC, Sprung R, Chen Y, Xu Y, Ball H, Pei J, Cheng T, Kho Y, Xiao H, Xiao L, Grishin NV, White M, Yang XJ, Zhao Y.
 Mol Cell. 2006 Aug;23(4):607-18. [PMID: 16916647]
 [5] The fasted/fed mouse metabolic acetylome: N6-acetylation differences suggest acetylation coordinates organ-specific fuel switching.
 Yang L, Vaitheesvaran B, Hartil K, Robinson AJ, Hoopmann MR, Eng JK, Kurland IJ, Bruce JE.
 J Proteome Res. 2011 Sep 2;10(9):4134-49. [PMID: 21728379]
 [6] Mitochondrial acetylome analysis in a mouse model of alcohol-induced liver injury utilizing SIRT3 knockout mice.
 Fritz KS, Galligan JJ, Hirschey MD, Verdin E, Petersen DR.
 J Proteome Res. 2012 Mar 2;11(3):1633-43. [PMID: 22309199]
 [7] Quantitative assessment of the impact of the gut microbiota on lysine epsilon-acetylation of host proteins using gnotobiotic mice.
 Simon GM, Cheng J, Gordon JI.
 Proc Natl Acad Sci U S A. 2012 Jul 10;109(28):11133-8. [PMID: 22733758]
 [8] Quantitative acetylome analysis reveals the roles of SIRT1 in regulating diverse substrates and cellular pathways.
 Chen Y, Zhao W, Yang JS, Cheng Z, Luo H, Lu Z, Tan M, Gu W, Zhao Y.
 Mol Cell Proteomics. 2012 Oct;11(10):1048-62. [PMID: 22826441]
 [9] Proteomic investigations of lysine acetylation identify diverse substrates of mitochondrial deacetylase sirt3.
 Sol EM, Wagner SA, Weinert BT, Kumar A, Kim HS, Deng CX, Choudhary C.
 PLoS One. 2012;7(12):e50545. [PMID: 23236377]
 [10] Circadian acetylome reveals regulation of mitochondrial metabolic pathways.
 Masri S, Patel VR, Eckel-Mahan KL, Peleg S, Forne I, Ladurner AG, Baldi P, Imhof A, Sassone-Corsi P.
 Proc Natl Acad Sci U S A. 2013 Feb 26;110(9):3339-44. [PMID: 23341599]
 [11] Label-free quantitative proteomics of the lysine acetylome in mitochondria identifies substrates of SIRT3 in metabolic pathways.
 Rardin MJ, Newman JC, Held JM, Cusack MP, Sorensen DJ, Li B, Schilling B, Mooney SD, Kahn CR, Verdin E, Gibson BW.
 Proc Natl Acad Sci U S A. 2013 Apr 16;110(16):6601-6. [PMID: 23576753]
 [12] Quantification of mitochondrial acetylation dynamics highlights prominent sites of metabolic regulation.
 Still AJ, Floyd BJ, Hebert AS, Bingman CA, Carson JJ, Gunderson DR, Dolan BK, Grimsrud PA, Dittenhafer-Reed KE, Stapleton DS, Keller MP, Westphall MS, Denu JM, Attie AD, Coon JJ, Pagliarini DJ.
 J Biol Chem. 2013 Jul 17;. [PMID: 23864654]
 [13] A proteomics approach to identify the ubiquitinated proteins in mouse heart.
 Jeon HB, Choi ES, Yoon JH, Hwang JH, Chang JW, Lee EK, Choi HW, Park ZY, Yoo YJ.
 Biochem Biophys Res Commun. 2007 Jun 8;357(3):731-6. [PMID: 17451654
Functional Description
 Catalyzes the isomerization of citrate to isocitrate via cis-aconitate (By similarity). 
Sequence Annotation
 REGION 192 194 Substrate binding (By similarity).
 REGION 670 671 Substrate binding (By similarity).
 METAL 385 385 Iron-sulfur (4Fe-4S) (By similarity).
 METAL 448 448 Iron-sulfur (4Fe-4S) (By similarity).
 METAL 451 451 Iron-sulfur (4Fe-4S) (By similarity).
 BINDING 99 99 Substrate (By similarity).
 BINDING 474 474 Substrate (By similarity).
 BINDING 479 479 Substrate (By similarity).
 BINDING 607 607 Substrate (By similarity).
 MOD_RES 28 28 Pyrrolidone carboxylic acid (By
 MOD_RES 50 50 N6-acetyllysine.
 MOD_RES 559 559 Phosphoserine (By similarity).
 MOD_RES 573 573 N6-acetyllysine (By similarity).
 MOD_RES 605 605 N6-acetyllysine (By similarity).
 CROSSLNK 144 144 Glycyl lysine isopeptide (Lys-Gly)  
Keyword
 4Fe-4S; Acetylation; Complete proteome; Direct protein sequencing; Iron; Iron-sulfur; Isopeptide bond; Lyase; Metal-binding; Mitochondrion; Phosphoprotein; Pyrrolidone carboxylic acid; Reference proteome; Transit peptide; Tricarboxylic acid cycle; Ubl conjugation. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 780 AA 
Protein Sequence
MAPYSLLVTR LQKALGVRQY HVASVLCQRA KVAMSHFEPS EYIRYDLLEK NINIVRKRLN 60
RPLTLSEKIV YGHLDDPANQ EIERGKTYLR LRPDRVAMQD ATAQMAMLQF ISSGLPKVAV 120
PSTIHCDHLI EAQVGGEKDL RRAKDINQEV YNFLATAGAK YGVGFWRPGS GIIHQIILEN 180
YAYPGVLLIG TDSHTPNGGG LGGICIGVGG ADAVDVMAGI PWELKCPKVI GVKLTGSLSG 240
WTSPKDVILK VAGILTVKGG TGAIVEYHGP GVDSISCTGM ATICNMGAEI GATTSVFPYN 300
HRMKKYLSKT GRTDIANLAE EFKDHLVPDP GCQYDQVIEI NLNELKPHIN GPFTPDLAHP 360
VADVGTVAEK EGWPLDIRVG LIGSCTNSSY EDMGRSAAVA KQALAHGLKC KSQFTITPGS 420
EQIRATIERD GYAQILRDVG GIVLANACGP CIGQWDRKDI KKGEKNTIVT SYNRNFTGRN 480
DANPETHAFV TSPEIVTALA IAGTLKFNPE TDFLTGKDGK KFKLEAPDAD ELPRSDFDPG 540
QDTYQHPPKD SSGQRVDVSP TSQRLQLLEP FDKWDGKDLE DLQILIKVKG KCTTDHISAA 600
GPWLKFRGHL DNISNNLLIG AINIENGKAN SVRNAVTQEF GPVPDTARYY KKHGIRWVVI 660
GDENYGEGSS REHAALEPRH LGGRAIITKS FARIHETNLK KQGLLPLTFA DPSDYNKIHP 720
VDKLTIQGLK DFAPGKPLKC VIKHPNGTQE TILLNHTFNE TQIEWFRAGS ALNRMKELQQ 780 
Gene Ontology
 GO:0005739; C:mitochondrion; IDA:MGI.
 GO:0005634; C:nucleus; IEA:Compara.
 GO:0051538; F:3 iron, 4 sulfur cluster binding; IEA:Compara.
 GO:0051539; F:4 iron, 4 sulfur cluster binding; IEA:UniProtKB-KW.
 GO:0003994; F:aconitate hydratase activity; IDA:MGI.
 GO:0052632; F:citrate hydro-lyase (cis-aconitate-forming) activity; IEA:EC.
 GO:0005506; F:iron ion binding; IEA:Compara.
 GO:0052633; F:isocitrate hydro-lyase (cis-aconitate-forming) activity; IEA:EC.
 GO:0006101; P:citrate metabolic process; IEA:Compara.
 GO:0006102; P:isocitrate metabolic process; IEA:Compara.
 GO:0006099; P:tricarboxylic acid cycle; IEA:UniProtKB-UniPathway. 
Interpro
 IPR015931; Acnase/IPM_dHydase_lsu_aba_1/3.
 IPR015937; Acoase/IPM_deHydtase.
 IPR001030; Acoase/IPM_deHydtase_lsu_aba.
 IPR015928; Aconitase/3IPM_dehydase_swvl.
 IPR015932; Aconitase/IPMdHydase_lsu_aba_2.
 IPR018136; Aconitase_4Fe-4S_BS.
 IPR006248; Aconitase_mito-like.
 IPR000573; AconitaseA/IPMdHydase_ssu_swvl. 
Pfam
 PF00330; Aconitase
 PF00694; Aconitase_C 
SMART
  
PROSITE
 PS00450; ACONITASE_1
 PS01244; ACONITASE_2 
PRINTS
 PR00415; ACONITASE.