CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-013878
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 DNA-directed RNA polymerase subunit alpha 
Protein Synonyms/Alias
 RNAP subunit alpha; RNA polymerase subunit alpha; Transcriptase subunit alpha 
Gene Name
 rpoA 
Gene Synonyms/Alias
 TTHA1664 
Created Date
 July 27, 2013 
Organism
 Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) 
NCBI Taxa ID
 300852 
Lysine Modification
Position
Peptide
Type
References
194GQRTDLDKLTLRIWTacetylation[1]
270TRVLHSLKEEGIESVacetylation[1]
Reference
 [1] Acetylome with structural mapping reveals the significance of lysine acetylation in Thermus thermophilus.
 Okanishi H, Kim K, Masui R, Kuramitsu S.
 J Proteome Res. 2013 Aug 1;. [PMID: 23901841
Functional Description
 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. 
Sequence Annotation
 REGION 1 229 Alpha N-terminal domain (alpha-NTD) (By
 REGION 247 315 Alpha C-terminal domain (alpha-CTD) (By  
Keyword
 3D-structure; Complete proteome; DNA-directed RNA polymerase; Nucleotidyltransferase; Reference proteome; Transcription; Transferase. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 315 AA 
Protein Sequence
MLDSKLKAPV FTVRTQGREY GEFVLEPLER GFGVTLGNPL RRILLSSIPG TAVTSVYIED 60
VLHEFSTIPG VKEDVVEIIL NLKELVVRFL NPSLQTVTLL LKAEGPKEVK ARDFLPVADV 120
EIMNPDLHIA TLEEGGRLNM EVRVDRGVGY VPAEKHGIKD RINAIPVDAV FSPVRRVAFQ 180
VEDTRLGQRT DLDKLTLRIW TDGSVTPLEA LNQAVEILRE HLTYFSNPQA AAVAAPEEAK 240
EPEAPPEQEE ELDLPLEELG LSTRVLHSLK EEGIESVRAL LALNLKDLKN IPGIGERSLE 300
EIKEALEKKG FTLKE 315 
Gene Ontology
 GO:0003677; F:DNA binding; IEA:HAMAP.
 GO:0003899; F:DNA-directed RNA polymerase activity; IEA:HAMAP.
 GO:0006281; P:DNA repair; IEA:InterPro.
 GO:0006351; P:transcription, DNA-dependent; IEA:HAMAP. 
Interpro
 IPR011261; DNA-dir_RNA_pol_dimersation.
 IPR011262; DNA-dir_RNA_pol_insert.
 IPR009025; DNA-dir_RNA_pol_RBP11-like.
 IPR011263; DNA-dir_RNA_pol_RpoA/D/Rpb3.
 IPR011773; DNA-dir_RpoA.
 IPR003583; Hlx-hairpin-Hlx_DNA-bd_motif.
 IPR011260; RNAP_asu_C. 
Pfam
 PF01000; RNA_pol_A_bac
 PF03118; RNA_pol_A_CTD
 PF01193; RNA_pol_L 
SMART
 SM00278; HhH1
 SM00662; RPOLD 
PROSITE
  
PRINTS