CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-004543
UniProt Accession
Genbank Protein ID
 X16933 
Genbank Nucleotide ID
Protein Name
 Heterogeneous nuclear ribonucleoprotein C 
Protein Synonyms/Alias
 hnRNP C; hnRNP core protein C 
Gene Name
 Hnrnpc 
Gene Synonyms/Alias
 Hnrpc 
Created Date
 July 27, 2013 
Organism
 Rattus norvegicus (Rat) 
NCBI Taxa ID
 10116 
Lysine Modification
Position
Peptide
Type
References
49SPDTPEEKIREYFGGubiquitination[1]
Reference
 [1] Synaptic protein ubiquitination in rat brain revealed by antibody-based ubiquitome analysis.
 Na CH, Jones DR, Yang Y, Wang X, Xu Y, Peng J.
 J Proteome Res. 2012 Sep 7;11(9):4722-32. [PMID: 22871113
Functional Description
 Binds pre-mRNA and nucleates the assembly of 40S hnRNP particles. Single HNRNPC tetramers bind 230-240 nucleotides. Trimers of HNRNPC tetramers bind 700 nucleotides. May play a role in the early steps of spliceosome assembly and pre-mRNA splicing. Interacts with poly-U tracts in the 3'-UTR or 5'-UTR of mRNA and modulates the stability and the level of translation of bound mRNA molecules (By similarity). 
Sequence Annotation
 DOMAIN 34 113 RRM.
 MOD_RES 123 123 Phosphoserine (By similarity).  
Keyword
 Complete proteome; mRNA processing; mRNA splicing; Nucleus; Phosphoprotein; Reference proteome; Ribonucleoprotein; RNA-binding; Spliceosome; Ubl conjugation. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 158 AA 
Protein Sequence
ESVDKVMDQK EHKLNGKVID PKRAKAMKTK EPVKKIFVGG LSPDTPEEKI REYFGGFGEV 60
ESIELPMDNK TNKRRGFCFI TFKEEEPVKK IMEKKYHNVG LSKCEIKVAM SKEQYQQQQQ 120
WGSRGGFAGR ARGRGGDQQS GYGKVSRRGG HQNSYKPY 158 
Gene Ontology
 GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
 GO:0000166; F:nucleotide binding; IEA:InterPro.
 GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
 GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
 GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. 
Interpro
 IPR012677; Nucleotide-bd_a/b_plait.
 IPR000504; RRM_dom. 
Pfam
 PF00076; RRM_1 
SMART
 SM00360; RRM 
PROSITE
 PS50102; RRM 
PRINTS