CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-002903
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 ATP-dependent dethiobiotin synthetase BioD 2 
Protein Synonyms/Alias
 DTB synthetase 2; DTBS 2; Dethiobiotin synthase 2 
Gene Name
 bioD2 
Gene Synonyms/Alias
 ynfK; b1593; JW5264 
Created Date
 July 27, 2013 
Organism
 Escherichia coli (strain K12) 
NCBI Taxa ID
 83333 
Lysine Modification
Position
Peptide
Type
References
32QALASQGKTVAGYKPacetylation[1]
38GKTVAGYKPVAKGSKacetylation[1]
Reference
 [1] Acetyl-Phosphate Is a Critical Determinant of Lysine Acetylation in E. coli.
 Weinert BT, Iesmantavicius V, Wagner SA, Schölz C, Gummesson B, Beli P, Nyström T, Choudhary C.
 Mol Cell. 2013 Jul 25;51(2):265-72. [PMID: 23830618
Functional Description
 Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring (By similarity). 
Sequence Annotation
 NP_BIND 13 18 ATP (By similarity).
 NP_BIND 112 115 ATP (By similarity).
 NP_BIND 172 173 ATP (By similarity).
 NP_BIND 201 203 ATP (By similarity).
 METAL 17 17 Magnesium 2 (By similarity).
 METAL 55 55 Magnesium 2 (By similarity).
 METAL 112 112 Magnesium 2 (By similarity).
 BINDING 55 55 ATP (By similarity).
 BINDING 208 208 ATP (By similarity).  
Keyword
 ATP-binding; Biotin biosynthesis; Complete proteome; Cytoplasm; Ligase; Magnesium; Metal-binding; Nucleotide-binding; Reference proteome. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 231 AA 
Protein Sequence
MLKRFFITGT DTSVGKTVVS RALLQALASQ GKTVAGYKPV AKGSKETPEG LRNKDALVLQ 60
SVSTIELPYE AVNPIALSEE ESSVAHSCPI NYTLISNGLA NLTEKVDHVV VEGTGGWRSL 120
MNDLRPLSEW VVQEQLPVLM VVGIQEGCIN HALLTAQAIA NDGLPLIGWV ANRINPGLAH 180
YAEIIDVLGK KLPAPLIGEL PYLPRAEQRE LGQYIRLAML RSVLAVDRVT V 231 
Gene Ontology
 GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
 GO:0005524; F:ATP binding; IEA:HAMAP.
 GO:0004141; F:dethiobiotin synthase activity; IEA:HAMAP.
 GO:0000287; F:magnesium ion binding; IEA:HAMAP.
 GO:0009102; P:biotin biosynthetic process; IEA:HAMAP. 
Interpro
 IPR002586; CobQ/CobB/MinD/ParA_Nub-bd_dom.
 IPR004472; DTB_synth_BioD.
 IPR027417; P-loop_NTPase. 
Pfam
 PF01656; CbiA 
SMART
  
PROSITE
  
PRINTS