CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-012707
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 [Pyruvate dehydrogenase [lipoamide]] kinase isozyme 4, mitochondrial 
Protein Synonyms/Alias
 Pyruvate dehydrogenase kinase isoform 4 
Gene Name
 PDK4 
Gene Synonyms/Alias
 PDHK4 
Created Date
 July 27, 2013 
Organism
 Homo sapiens (Human) 
NCBI Taxa ID
 9606 
Lysine Modification
Position
Peptide
Type
References
38SPSPLSMKQLLDFGSubiquitination[1]
111EKSPDDQKALSDFVDubiquitination[1, 2]
122DFVDTLIKVRNRHHNubiquitination[2]
142AQGIIEYKDACTVDPubiquitination[1]
226YLSSPELKLTQVNGKubiquitination[1]
380EKLPVFNKSAFKHYQubiquitination[1]
384VFNKSAFKHYQMSSEubiquitination[1]
Reference
 [1] Global identification of modular cullin-RING ligase substrates.
 Emanuele MJ, Elia AE, Xu Q, Thoma CR, Izhar L, Leng Y, Guo A, Chen YN, Rush J, Hsu PW, Yen HC, Elledge SJ.
 Cell. 2011 Oct 14;147(2):459-74. [PMID: 21963094]
 [2] Systematic and quantitative assessment of the ubiquitin-modified proteome.
 Kim W, Bennett EJ, Huttlin EL, Guo A, Li J, Possemato A, Sowa ME, Rad R, Rush J, Comb MJ, Harper JW, Gygi SP.
 Mol Cell. 2011 Oct 21;44(2):325-40. [PMID: 21906983
Functional Description
 Serine/threonine kinase that plays a key role in regulation of glucose and fatty acid metabolism and homeostasis via phosphorylation of the pyruvate dehydrogenase subunits PDHA1 and PDHA2. This inhibits pyruvate dehydrogenase activity, and thereby regulates metabolite flux through the tricarboxylic acid cycle, down-regulates aerobic respiration and inhibits the formation of acetyl-coenzyme A from pyruvate. Inhibition of pyruvate dehydrogenase decreases glucose utilization and increases fat metabolism in response to prolonged fasting and starvation. Plays an important role in maintaining normal blood glucose levels under starvation, and is involved in the insulin signaling cascade. Via its regulation of pyruvate dehydrogenase activity, plays an important role in maintaining normal blood pH and in preventing the accumulation of ketone bodies under starvation. In the fed state, mediates cellular responses to glucose levels and to a high-fat diet. Regulates both fatty acid oxidation and de novo fatty acid biosynthesis. Plays a role in the generation of reactive oxygen species. Protects detached epithelial cells against anoikis. Plays a role in cell proliferation via its role in regulating carbohydrate and fatty acid metabolism. 
Sequence Annotation
 DOMAIN 138 368 Histidine kinase.
 NP_BIND 254 261 ATP.
 NP_BIND 312 313 ATP.
 NP_BIND 329 334 ATP.
 BINDING 293 293 ATP.  
Keyword
 3D-structure; ATP-binding; Carbohydrate metabolism; Complete proteome; Glucose metabolism; Kinase; Mitochondrion; Nucleotide-binding; Polymorphism; Reference proteome; Serine/threonine-protein kinase; Transferase; Transit peptide. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 411 AA 
Protein Sequence
MKAARFVLRS AGSLNGAGLV PREVEHFSRY SPSPLSMKQL LDFGSENACE RTSFAFLRQE 60
LPVRLANILK EIDILPTQLV NTSSVQLVKS WYIQSLMDLV EFHEKSPDDQ KALSDFVDTL 120
IKVRNRHHNV VPTMAQGIIE YKDACTVDPV TNQNLQYFLD RFYMNRISTR MLMNQHILIF 180
SDSQTGNPSH IGSIDPNCDV VAVVQDAFEC SRMLCDQYYL SSPELKLTQV NGKFPDQPIH 240
IVYVPSHLHH MLFELFKNAM RATVEHQENQ PSLTPIEVIV VLGKEDLTIK ISDRGGGVPL 300
RIIDRLFSYT YSTAPTPVMD NSRNAPLAGF GYGLPISRLY AKYFQGDLNL YSLSGYGTDA 360
IIYLKALSSE SIEKLPVFNK SAFKHYQMSS EADDWCIPSR EPKNLAKEVA M 411 
Gene Ontology
 GO:0005743; C:mitochondrial inner membrane; IEA:Compara.
 GO:0005759; C:mitochondrial matrix; TAS:Reactome.
 GO:0005524; F:ATP binding; IDA:UniProtKB.
 GO:0004674; F:protein serine/threonine kinase activity; IEA:UniProtKB-KW.
 GO:0004740; F:pyruvate dehydrogenase (acetyl-transferring) kinase activity; ISS:UniProtKB.
 GO:0071398; P:cellular response to fatty acid; IMP:UniProtKB.
 GO:0009267; P:cellular response to starvation; IDA:UniProtKB.
 GO:0042593; P:glucose homeostasis; ISS:UniProtKB.
 GO:0006006; P:glucose metabolic process; IEA:UniProtKB-KW.
 GO:0008286; P:insulin receptor signaling pathway; IMP:UniProtKB.
 GO:2000811; P:negative regulation of anoikis; IMP:UniProtKB.
 GO:0006090; P:pyruvate metabolic process; TAS:Reactome.
 GO:0072593; P:reactive oxygen species metabolic process; IMP:UniProtKB.
 GO:0010510; P:regulation of acetyl-CoA biosynthetic process from pyruvate; IMP:UniProtKB.
 GO:0042304; P:regulation of fatty acid biosynthetic process; IMP:UniProtKB.
 GO:0046320; P:regulation of fatty acid oxidation; ISS:UniProtKB.
 GO:0010906; P:regulation of glucose metabolic process; IMP:UniProtKB.
 GO:0006885; P:regulation of pH; ISS:UniProtKB. 
Interpro
 IPR018955; BCDHK/PDK_N.
 IPR003594; HATPase_ATP-bd.
 IPR005467; Sig_transdc_His_kinase_core. 
Pfam
 PF10436; BCDHK_Adom3
 PF02518; HATPase_c 
SMART
 SM00387; HATPase_c 
PROSITE
 PS50109; HIS_KIN 
PRINTS