CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-015034
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 DNA-directed RNA polymerase subunit alpha 
Protein Synonyms/Alias
 RNAP subunit alpha; RNA polymerase subunit alpha; Transcriptase subunit alpha 
Gene Name
 rpoA 
Gene Synonyms/Alias
 RPA3226 
Created Date
 July 27, 2013 
Organism
 Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) 
NCBI Taxa ID
 258594 
Lysine Modification
Position
Peptide
Type
References
102KMQGEGPKRMVVKKQacetylation[1]
Reference
 [1] System-wide studies of N-lysine acetylation in Rhodopseudomonas palustris reveal substrate specificity of protein acetyltransferases.
 Crosby HA, Pelletier DA, Hurst GB, Escalante-Semerena JC.
 J Biol Chem. 2012 May 4;287(19):15590-601. [PMID: 22416131
Functional Description
 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (By similarity). 
Sequence Annotation
 REGION 1 235 Alpha N-terminal domain (alpha-NTD) (By
 REGION 251 339 Alpha C-terminal domain (alpha-CTD) (By  
Keyword
 Complete proteome; DNA-directed RNA polymerase; Nucleotidyltransferase; Transcription; Transferase. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 339 AA 
Protein Sequence
MTIQKNWQEL IRPNKLQVTP GSDATRFATL VAEPLERGFG QTLGNALRRV LLSSLQGAAV 60
QSVHIDGVLH EFSSIAGVRE DVTDIVLNIK DISLKMQGEG PKRMVVKKQG PGAVTAGDIQ 120
TVGDIVVLNP DLQLCTLDDG AEIRMEFTVN TGKGYVAAER NRPEDAPIGL IPVDSLYSPV 180
RKVSYKVENT REGQILDYDK LTMTVETNGA ISPEDAVAFA ARILQDQLNV FVNFEEPRKE 240
VTQEIIPDLA FNPAFLKKVD ELELSVRSAN CLKNDNIVYI GDLVQKSEAE MLRTPNFGRK 300
SLNEIKEVLA QMGLHLGMEV PGWPPENIDE LAKRFEDHY 339 
Gene Ontology
 GO:0003677; F:DNA binding; IEA:HAMAP.
 GO:0003899; F:DNA-directed RNA polymerase activity; IEA:HAMAP.
 GO:0006351; P:transcription, DNA-dependent; IEA:HAMAP. 
Interpro
 IPR011261; DNA-dir_RNA_pol_dimersation.
 IPR011262; DNA-dir_RNA_pol_insert.
 IPR009025; DNA-dir_RNA_pol_RBP11-like.
 IPR011263; DNA-dir_RNA_pol_RpoA/D/Rpb3.
 IPR011773; DNA-dir_RpoA.
 IPR011260; RNAP_asu_C. 
Pfam
 PF01000; RNA_pol_A_bac
 PF03118; RNA_pol_A_CTD
 PF01193; RNA_pol_L 
SMART
 SM00662; RPOLD 
PROSITE
  
PRINTS