CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-017794
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Cytosolic 10-formyltetrahydrofolate dehydrogenase 
Protein Synonyms/Alias
 10-FTHFDH; FDH; Aldehyde dehydrogenase family 1 member L1 
Gene Name
 Aldh1l1 
Gene Synonyms/Alias
 Fthfd 
Created Date
 July 27, 2013 
Organism
 Mus musculus (Mouse) 
NCBI Taxa ID
 10090 
Lysine Modification
Position
Peptide
Type
References
21EVYCQLRKEGHEVVGubiquitination[1]
35GVFTIPDKDGKADPLacetylation[2, 3, 4]
38TIPDKDGKADPLGLEacetylation[5]
38TIPDKDGKADPLGLEsuccinylation[5]
38TIPDKDGKADPLGLEubiquitination[1]
48PLGLEAEKDGVPVFKacetylation[2]
48PLGLEAEKDGVPVFKubiquitination[1]
55KDGVPVFKFPRWRARubiquitination[1]
128WTLIHGDKKGGFTIFacetylation[3]
128WTLIHGDKKGGFTIFubiquitination[1]
205ATYEGIQKKETAMINacetylation[3]
205ATYEGIQKKETAMINubiquitination[1]
206TYEGIQKKETAMINWubiquitination[1]
229NWIRGNDKVPGAWTEacetylation[2, 3, 4]
229NWIRGNDKVPGAWTEubiquitination[1]
290DDRMLLVKNIQLEDGubiquitination[1]
298NIQLEDGKMMPASQFubiquitination[1]
349EDSTDFFKSGAASVDubiquitination[1]
394FIQLLVRKLRGEDGEubiquitination[1]
411CVINYVEKAVKKLTLacetylation[2]
411CVINYVEKAVKKLTLubiquitination[1]
415YVEKAVKKLTLQMPYubiquitination[1]
463AQVSDVDKAVAAAKEacetylation[2]
469DKAVAAAKEAFENGLubiquitination[1]
479FENGLWGKINARDRGacetylation[2, 3, 6]
479FENGLWGKINARDRGubiquitination[1]
597AGNTVVIKPAQVTPLubiquitination[1]
608VTPLTALKFAELTLKubiquitination[1]
615KFAELTLKAGIPKGVubiquitination[1]
620TLKAGIPKGVVNILPubiquitination[1]
645SDHPDVRKIGFTGSTubiquitination[1]
656TGSTEVGKHIMKSCAubiquitination[1]
660EVGKHIMKSCALSNVacetylation[2, 3, 6]
660EVGKHIMKSCALSNVubiquitination[1]
668SCALSNVKKVSLELGubiquitination[1]
669CALSNVKKVSLELGGubiquitination[1]
677VSLELGGKSPLIIFAubiquitination[1]
703MSSVFFNKGENCIAAacetylation[2]
703MSSVFFNKGENCIAAubiquitination[1]
726IHDQFVQKVVEEVGKubiquitination[1]
757NHEAHLRKLVEYCQRubiquitination[1]
767EYCQRGVKEGATLVCacetylation[2, 5]
767EYCQRGVKEGATLVCsuccinylation[5]
767EYCQRGVKEGATLVCubiquitination[1]
845VFTRDINKALYVSDKubiquitination[1]
852KALYVSDKLQAGTVFubiquitination[1]
865VFVNTYNKTDVAAPFacetylation[2]
865VFVNTYNKTDVAAPFubiquitination[1]
876AAPFGGFKQSGFGKDacetylation[2]
876AAPFGGFKQSGFGKDubiquitination[1]
882FKQSGFGKDLGEAALacetylation[2, 3, 4, 6]
882FKQSGFGKDLGEAALubiquitination[1]
Reference
 [1] Proteomic analyses reveal divergent ubiquitylation site patterns in murine tissues.
 Wagner SA, Beli P, Weinert BT, Schölz C, Kelstrup CD, Young C, Nielsen ML, Olsen JV, Brakebusch C, Choudhary C.
 Mol Cell Proteomics. 2012 Dec;11(12):1578-85. [PMID: 22790023]
 [2] Quantitative assessment of the impact of the gut microbiota on lysine epsilon-acetylation of host proteins using gnotobiotic mice.
 Simon GM, Cheng J, Gordon JI.
 Proc Natl Acad Sci U S A. 2012 Jul 10;109(28):11133-8. [PMID: 22733758]
 [3] Calorie restriction and SIRT3 trigger global reprogramming of the mitochondrial protein acetylome.
 Hebert AS, Dittenhafer-Reed KE, Yu W, Bailey DJ, Selen ES, Boersma MD, Carson JJ, Tonelli M, Balloon AJ, Higbee AJ, Westphall MS, Pagliarini DJ, Prolla TA, Assadi-Porter F, Roy S, Denu JM, Coon JJ.
 Mol Cell. 2013 Jan 10;49(1):186-99. [PMID: 23201123]
 [4] Quantification of mitochondrial acetylation dynamics highlights prominent sites of metabolic regulation.
 Still AJ, Floyd BJ, Hebert AS, Bingman CA, Carson JJ, Gunderson DR, Dolan BK, Grimsrud PA, Dittenhafer-Reed KE, Stapleton DS, Keller MP, Westphall MS, Denu JM, Attie AD, Coon JJ, Pagliarini DJ.
 J Biol Chem. 2013 Jul 17;. [PMID: 23864654]
 [5] SIRT5-Mediated Lysine Desuccinylation Impacts Diverse Metabolic Pathways.
 Park J, Chen Y, Tishkoff DX, Peng C, Tan M, Dai L, Xie Z, Zhang Y, Zwaans BM, Skinner ME, Lombard DB, Zhao Y.
 Mol Cell. 2013 Jun 27;50(6):919-30. [PMID: 23806337]
 [6] Circadian acetylome reveals regulation of mitochondrial metabolic pathways.
 Masri S, Patel VR, Eckel-Mahan KL, Peleg S, Forne I, Ladurner AG, Baldi P, Imhof A, Sassone-Corsi P.
 Proc Natl Acad Sci U S A. 2013 Feb 26;110(9):3339-44. [PMID: 23341599
Functional Description
  
Sequence Annotation
 DOMAIN 323 392 Acyl carrier.
 NP_BIND 571 573 NADP (By similarity).
 NP_BIND 597 600 NADP (By similarity).
 NP_BIND 630 635 NADP (By similarity).
 NP_BIND 650 651 NADP (By similarity).
 NP_BIND 804 806 NADP (By similarity).
 REGION 1 203 GART.
 REGION 88 90 Substrate binding (By similarity).
 REGION 417 902 Aldehyde dehydrogenase.
 ACT_SITE 106 106 Proton donor (By similarity).
 ACT_SITE 673 673 Proton acceptor (By similarity).
 ACT_SITE 707 707 Proton donor (By similarity).
 BINDING 142 142 Substrate (By similarity).
 BINDING 757 757 NADP (By similarity).
 MOD_RES 354 354 O-(pantetheine 4'-phosphoryl)serine;
 MOD_RES 354 354 Phosphoserine; alternate (By similarity).  
Keyword
 Complete proteome; Cytoplasm; NADP; One-carbon metabolism; Oxidoreductase; Phosphopantetheine; Phosphoprotein; Reference proteome. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 902 AA 
Protein Sequence
MKIAVIGQSL FGQEVYCQLR KEGHEVVGVF TIPDKDGKAD PLGLEAEKDG VPVFKFPRWR 60
ARGQALPEVV AKYQALGAEL NVLPFCSQFI PMEVINAPRH GSIIYHPSLL PRHRGASAIN 120
WTLIHGDKKG GFTIFWADDG LDTGDLLLQK ECDVLPDDTV STLYNRFLFP EGIKGMVQAV 180
RLIAEGTAPR RPQPEEGATY EGIQKKETAM INWDQPAEAI HNWIRGNDKV PGAWTEACGQ 240
KLTFFNSTLN TSGLVAQGEA LPIPGAHRPG LVTKAGLILF GNDDRMLLVK NIQLEDGKMM 300
PASQFFKGSA SSALELTEEE LATAEAVRSS WMRILPNVPE VEDSTDFFKS GAASVDVVRL 360
VEEVKELCDG LELENEDVYM ATTFGDFIQL LVRKLRGEDG ESECVINYVE KAVKKLTLQM 420
PYQLFIGGEF VDAEGAKTYS TINPTDGSVI CQVSLAQVSD VDKAVAAAKE AFENGLWGKI 480
NARDRGRLLY RLADLMEQHQ EELATIEALD AGAVYTLALK THVGMSIQTF RYFAGWCDKI 540
QGATIPINQA RPNRNLTLTK KEPVGVCGIV IPWNYPLMML SWKTAACLAA GNTVVIKPAQ 600
VTPLTALKFA ELTLKAGIPK GVVNILPGSG SLVGQRLSDH PDVRKIGFTG STEVGKHIMK 660
SCALSNVKKV SLELGGKSPL IIFADCDLNK AVQMGMSSVF FNKGENCIAA GRLFVEDSIH 720
DQFVQKVVEE VGKMKIGNPL DRDTNHGPQN HEAHLRKLVE YCQRGVKEGA TLVCGGNQVP 780
RPGFFFQPTV FTDVEDHMYI AKEESFGPIM IISRFADGDV DAVLSRANAT EFGLASGVFT 840
RDINKALYVS DKLQAGTVFV NTYNKTDVAA PFGGFKQSGF GKDLGEAALN EYLRIKTVTF 900
EY 902 
Gene Ontology
 GO:0005739; C:mitochondrion; IDA:MGI.
 GO:0016155; F:formyltetrahydrofolate dehydrogenase activity; IEA:EC.
 GO:0016742; F:hydroxymethyl-, formyl- and related transferase activity; IEA:InterPro.
 GO:0008168; F:methyltransferase activity; IEA:InterPro.
 GO:0016620; F:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor; IEA:InterPro.
 GO:0009258; P:10-formyltetrahydrofolate catabolic process; IEA:InterPro.
 GO:0009058; P:biosynthetic process; IEA:InterPro.
 GO:0032259; P:methylation; IEA:GOC.
 GO:0006730; P:one-carbon metabolic process; IEA:UniProtKB-KW. 
Interpro
 IPR011407; 10_FTHF_DH.
 IPR009081; Acyl_carrier_prot-like.
 IPR016161; Ald_DH/histidinol_DH.
 IPR016163; Ald_DH_C.
 IPR016160; Ald_DH_CS.
 IPR016162; Ald_DH_N.
 IPR015590; Aldehyde_DH_dom.
 IPR005793; Formyl_trans_C.
 IPR002376; Formyl_transf_N.
 IPR011034; Formyl_transferase_C-like.
 IPR001555; GART_AS. 
Pfam
 PF00171; Aldedh
 PF02911; Formyl_trans_C
 PF00551; Formyl_trans_N
 PF00550; PP-binding 
SMART
  
PROSITE
 PS50075; ACP_DOMAIN
 PS00070; ALDEHYDE_DEHYDR_CYS
 PS00687; ALDEHYDE_DEHYDR_GLU
 PS00373; GART
 PS00012; PHOSPHOPANTETHEINE 
PRINTS