CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-006403
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Heat shock 70 kDa protein 4 
Protein Synonyms/Alias
 HSP70RY; Heat shock 70-related protein APG-2 
Gene Name
 HSPA4 
Gene Synonyms/Alias
 APG2 
Created Date
 July 27, 2013 
Organism
 Homo sapiens (Human) 
NCBI Taxa ID
 9606 
Lysine Modification
Position
Peptide
Type
References
44ACISFGPKNRSIGAAubiquitination[1, 2]
53RSIGAAAKSQVISNAubiquitination[1, 2, 3]
61SQVISNAKNTVQGFKubiquitination[1, 2]
84DPFVEAEKSNLAYDIubiquitination[1]
124VTAMLLSKLKETAESubiquitination[1, 3, 4, 5, 6]
126AMLLSKLKETAESVLubiquitination[1, 2, 3]
135TAESVLKKPVVDCVVubiquitination[1, 2]
194DLPALEEKPRNVVFVacetylation[2, 7]
194DLPALEEKPRNVVFVubiquitination[1, 2, 3, 5, 8]
221AFNRGKLKVLATAFDubiquitination[1, 2, 4]
235DTTLGGRKFDEVLVNubiquitination[1, 2]
272RLSQECEKLKKLMSAacetylation[2, 7, 9, 10]
305SGTMNRGKFLEMCNDubiquitination[1, 2, 6, 8, 11]
329RSVLEQTKLKKEDIYacetylation[2]
329RSVLEQTKLKKEDIYubiquitination[1]
331VLEQTKLKKEDIYAVubiquitination[1]
332LEQTKLKKEDIYAVEubiquitination[1]
351ATRIPAVKEKISKFFubiquitination[2]
353RIPAVKEKISKFFGKubiquitination[1]
356AVKEKISKFFGKELSacetylation[2]
356AVKEKISKFFGKELSubiquitination[1]
360KISKFFGKELSTTLNubiquitination[1, 3, 6]
388AILSPAFKVREFSITubiquitination[1, 3, 4, 12]
422SDCEVFSKNHAAPFSacetylation[2]
422SDCEVFSKNHAAPFSubiquitination[1, 2, 5, 11]
430NHAAPFSKVLTFYRKacetylation[2, 9, 10]
430NHAAPFSKVLTFYRKubiquitination[1, 4]
437KVLTFYRKEPFTLEAubiquitination[3]
477QSDGSSSKVKVKVRVubiquitination[1, 2]
479DGSSSKVKVKVRVNVubiquitination[1]
517METDQNAKEEEKMQVubiquitination[3]
543QQTPAENKAESEEMEubiquitination[3, 5, 6]
557ETSQAGSKDKKMDQPacetylation[7]
557ETSQAGSKDKKMDQPmethylation[13]
557ETSQAGSKDKKMDQPubiquitination[3, 6]
559SQAGSKDKKMDQPPQmethylation[13]
568MDQPPQAKKAKVKTSubiquitination[3]
573QAKKAKVKTSTVDLPubiquitination[3, 6]
609GKMIMQDKLEKERNDubiquitination[1, 3]
618EKERNDAKNAVEEYVubiquitination[1, 2]
631YVYEMRDKLSGEYEKacetylation[2]
631YVYEMRDKLSGEYEKubiquitination[2]
638KLSGEYEKFVSEDDRubiquitination[3, 4, 6, 8]
668EDGEDQPKQVYVDKLubiquitination[3, 6]
674PKQVYVDKLAELKNLacetylation[2, 7, 10]
674PKQVYVDKLAELKNLubiquitination[1, 2, 4]
679VDKLAELKNLGQPIKacetylation[9, 10]
679VDKLAELKNLGQPIKubiquitination[1, 4]
686KNLGQPIKIRFQESEubiquitination[1, 2, 3, 4]
697QESEERPKLFEELGKubiquitination[4]
704KLFEELGKQIQQYMKubiquitination[1, 4]
711KQIQQYMKIISSFKNubiquitination[1, 2, 4]
719IISSFKNKEDQYDHLubiquitination[4]
733LDAADMTKVEKSTNEacetylation[7]
736ADMTKVEKSTNEAMEubiquitination[1, 4]
748AMEWMNNKLNLQNKQubiquitination[1, 4]
754NKLNLQNKQSLTMDPubiquitination[2, 3, 4, 6]
773KEIEAKIKELTSTCSubiquitination[4]
785TCSPIISKPKPKVEPubiquitination[4]
794KPKVEPPKEEQKNAEubiquitination[3, 5]
798EPPKEEQKNAEQNGPubiquitination[3]
833VPSDSDKKLPEMDIDubiquitination[3]
Reference
 [1] Refined preparation and use of anti-diglycine remnant (K-ε-GG) antibody enables routine quantification of 10,000s of ubiquitination sites in single proteomics experiments.
 Udeshi ND, Svinkina T, Mertins P, Kuhn E, Mani DR, Qiao JW, Carr SA.
 Mol Cell Proteomics. 2013 Mar;12(3):825-31. [PMID: 23266961]
 [2] Integrated proteomic analysis of post-translational modifications by serial enrichment.
 Mertins P, Qiao JW, Patel J, Udeshi ND, Clauser KR, Mani DR, Burgess MW, Gillette MA, Jaffe JD, Carr SA.
 Nat Methods. 2013 Jul;10(7):634-7. [PMID: 23749302]
 [3] Systematic and quantitative assessment of the ubiquitin-modified proteome.
 Kim W, Bennett EJ, Huttlin EL, Guo A, Li J, Possemato A, Sowa ME, Rad R, Rush J, Comb MJ, Harper JW, Gygi SP.
 Mol Cell. 2011 Oct 21;44(2):325-40. [PMID: 21906983]
 [4] A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles.
 Wagner SA, Beli P, Weinert BT, Nielsen ML, Cox J, Mann M, Choudhary C.
 Mol Cell Proteomics. 2011 Oct;10(10):M111.013284. [PMID: 21890473]
 [5] Global identification of modular cullin-RING ligase substrates.
 Emanuele MJ, Elia AE, Xu Q, Thoma CR, Izhar L, Leng Y, Guo A, Chen YN, Rush J, Hsu PW, Yen HC, Elledge SJ.
 Cell. 2011 Oct 14;147(2):459-74. [PMID: 21963094]
 [6] Landscape of the PARKIN-dependent ubiquitylome in response to mitochondrial depolarization.
 Sarraf SA, Raman M, Guarani-Pereira V, Sowa ME, Huttlin EL, Gygi SP, Harper JW.
 Nature. 2013 Apr 18;496(7445):372-6. [PMID: 23503661]
 [7] Proteomic investigations of lysine acetylation identify diverse substrates of mitochondrial deacetylase sirt3.
 Sol EM, Wagner SA, Weinert BT, Kumar A, Kim HS, Deng CX, Choudhary C.
 PLoS One. 2012;7(12):e50545. [PMID: 23236377]
 [8] Proteome-wide identification of ubiquitylation sites by conjugation of engineered lysine-less ubiquitin.
 Oshikawa K, Matsumoto M, Oyamada K, Nakayama KI.
 J Proteome Res. 2012 Feb 3;11(2):796-807. [PMID: 22053931]
 [9] Lysine acetylation targets protein complexes and co-regulates major cellular functions.
 Choudhary C, Kumar C, Gnad F, Nielsen ML, Rehman M, Walther TC, Olsen JV, Mann M.
 Science. 2009 Aug 14;325(5942):834-40. [PMID: 19608861]
 [10] Proteomic investigations reveal a role for RNA processing factor THRAP3 in the DNA damage response.
 Beli P, Lukashchuk N, Wagner SA, Weinert BT, Olsen JV, Baskcomb L, Mann M, Jackson SP, Choudhary C.
 Mol Cell. 2012 Apr 27;46(2):212-25. [PMID: 22424773]
 [11] Methods for quantification of in vivo changes in protein ubiquitination following proteasome and deubiquitinase inhibition.
 Udeshi ND, Mani DR, Eisenhaure T, Mertins P, Jaffe JD, Clauser KR, Hacohen N, Carr SA.
 Mol Cell Proteomics. 2012 May;11(5):148-59. [PMID: 22505724]
 [12] Ubiquitin ligase substrate identification through quantitative proteomics at both the protein and peptide levels.
 Lee KA, Hammerle LP, Andrews PS, Stokes MP, Mustelin T, Silva JC, Black RA, Doedens JR.
 J Biol Chem. 2011 Dec 2;286(48):41530-8. [PMID: 21987572]
 [13] Large-scale global identification of protein lysine methylation in vivo.
 Cao XJ, Arnaudo AM, Garcia BA.
 Epigenetics. 2013 May 1;8(5):477-85. [PMID: 23644510
Functional Description
  
Sequence Annotation
 MOD_RES 76 76 Phosphoserine.
 MOD_RES 89 89 Phosphotyrosine.
 MOD_RES 336 336 Phosphotyrosine.
 MOD_RES 430 430 N6-acetyllysine.
 MOD_RES 538 538 Phosphothreonine.
 MOD_RES 546 546 Phosphoserine.
 MOD_RES 660 660 Phosphotyrosine (By similarity).
 MOD_RES 679 679 N6-acetyllysine.  
Keyword
 Acetylation; ATP-binding; Complete proteome; Cytoplasm; Direct protein sequencing; Nucleotide-binding; Phosphoprotein; Reference proteome; Stress response. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 840 AA 
Protein Sequence
MSVVGIDLGF QSCYVAVARA GGIETIANEY SDRCTPACIS FGPKNRSIGA AAKSQVISNA 60
KNTVQGFKRF HGRAFSDPFV EAEKSNLAYD IVQLPTGLTG IKVTYMEEER NFTTEQVTAM 120
LLSKLKETAE SVLKKPVVDC VVSVPCFYTD AERRSVMDAT QIAGLNCLRL MNETTAVALA 180
YGIYKQDLPA LEEKPRNVVF VDMGHSAYQV SVCAFNRGKL KVLATAFDTT LGGRKFDEVL 240
VNHFCEEFGK KYKLDIKSKI RALLRLSQEC EKLKKLMSAN ASDLPLSIEC FMNDVDVSGT 300
MNRGKFLEMC NDLLARVEPP LRSVLEQTKL KKEDIYAVEI VGGATRIPAV KEKISKFFGK 360
ELSTTLNADE AVTRGCALQC AILSPAFKVR EFSITDVVPY PISLRWNSPA EEGSSDCEVF 420
SKNHAAPFSK VLTFYRKEPF TLEAYYSSPQ DLPYPDPAIA QFSVQKVTPQ SDGSSSKVKV 480
KVRVNVHGIF SVSSASLVEV HKSEENEEPM ETDQNAKEEE KMQVDQEEPH VEEQQQQTPA 540
ENKAESEEME TSQAGSKDKK MDQPPQAKKA KVKTSTVDLP IENQLLWQID REMLNLYIEN 600
EGKMIMQDKL EKERNDAKNA VEEYVYEMRD KLSGEYEKFV SEDDRNSFTL KLEDTENWLY 660
EDGEDQPKQV YVDKLAELKN LGQPIKIRFQ ESEERPKLFE ELGKQIQQYM KIISSFKNKE 720
DQYDHLDAAD MTKVEKSTNE AMEWMNNKLN LQNKQSLTMD PVVKSKEIEA KIKELTSTCS 780
PIISKPKPKV EPPKEEQKNA EQNGPVDGQG DNPGPQAAEQ GTDTAVPSDS DKKLPEMDID 840 
Gene Ontology
 GO:0005737; C:cytoplasm; NAS:UniProtKB.
 GO:0005634; C:nucleus; IDA:HPA.
 GO:0005524; F:ATP binding; NAS:UniProtKB.
 GO:0051131; P:chaperone-mediated protein complex assembly; IDA:BHF-UCL.
 GO:0045040; P:protein import into mitochondrial outer membrane; IDA:BHF-UCL.
 GO:0006986; P:response to unfolded protein; NAS:UniProtKB. 
Interpro
 IPR018181; Heat_shock_70_CS.
 IPR013126; Hsp_70_fam. 
Pfam
 PF00012; HSP70 
SMART
  
PROSITE
 PS00297; HSP70_1
 PS00329; HSP70_2
 PS01036; HSP70_3 
PRINTS
 PR00301; HEATSHOCK70.