CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-034663
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
  
Protein Name
 Protein Upf3b 
Protein Synonyms/Alias
  
Gene Name
 Upf3b 
Gene Synonyms/Alias
  
Created Date
 July 27, 2013 
Organism
 Rattus norvegicus (Rat) 
NCBI Taxa ID
 10116 
Lysine Modification
Position
Peptide
Type
References
249RKRKDIEKLKKIERIacetylation[1]
Reference
 [1] Proteomic analysis of lysine acetylation sites in rat tissues reveals organ specificity and subcellular patterns.
 Lundby A, Lage K, Weinert BT, Bekker-Jensen DB, Secher A, Skovgaard T, Kelstrup CD, Dmytriyev A, Choudhary C, Lundby C, Olsen JV.
 Cell Rep. 2012 Aug 30;2(2):419-31. [PMID: 22902405] 
Functional Description
  
Sequence Annotation
  
Keyword
 Complete proteome; Reference proteome. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 472 AA 
Protein Sequence
MKEEKDHRPK EKRVTLLTPQ GATGGCIGAT AEGAKGDDRQ DRNRDKKEAL SKVVIRRLPP 60
TLTKEQLQEH LQPMPEHDYF EFFSNDTSLY PHMYARAYIN FKNQEDILLF RDRFDGYVFL 120
DNKGQEYHAI VEFAPFQKAA KKKIKKRDTK VGTIEDDPEY RKFLESYATD NEKMTSTPET 180
LLEEIEAKNR ELIAKRTTPL LSFLKNKQRM REEKREERRR REIERKRQRE EERRKWKEEE 240
KRKRKDIEKL KKIERIPERE KIRDEPKIKL LRKPEKGDEK ELDKRDKTKR LDKENLNEDR 300
ASGHSYTLPR RSDVELKDEK PKRPDDESVR DYRDRDRDYE RDQERMIRER ERMKRQEEER 360
RRQQQKERYE KEKAFKRKEE EMKREKEALR DKGKKSENTE SICSLEKIEK KEEVVKRDRI 420
RNKDRPAMQL YQPGARSRSR LCPADDSIKP GDSPVEKKQE SGISHRKEGG EE 472 
Gene Ontology
 GO:0005737; C:cytoplasm; IEA:Compara.
 GO:0035145; C:exon-exon junction complex; IEA:Compara.
 GO:0003729; F:mRNA binding; IEA:Compara.
 GO:0000166; F:nucleotide binding; IEA:InterPro.
 GO:0045727; P:positive regulation of translation; IEA:Compara. 
Interpro
 IPR005120; Nonsense_mediated_decay_UPF3.
 IPR012677; Nucleotide-bd_a/b_plait. 
Pfam
 PF03467; Smg4_UPF3 
SMART
  
PROSITE
  
PRINTS