CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-018632
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 RING finger protein 39 
Protein Synonyms/Alias
 LTP-induced RING finger protein 
Gene Name
 Rnf39 
Gene Synonyms/Alias
 Lirf 
Created Date
 July 27, 2013 
Organism
 Rattus norvegicus (Rat) 
NCBI Taxa ID
 10116 
Lysine Modification
Position
Peptide
Type
References
94ISRGLREKLAEPGARacetylation[1]
Reference
 [1] Proteomic analysis of lysine acetylation sites in rat tissues reveals organ specificity and subcellular patterns.
 Lundby A, Lage K, Weinert BT, Bekker-Jensen DB, Secher A, Skovgaard T, Kelstrup CD, Dmytriyev A, Choudhary C, Lundby C, Olsen JV.
 Cell Rep. 2012 Aug 30;2(2):419-31. [PMID: 22902405] 
Functional Description
 May play a role in prolonged long term-potentiation (LTP) maintenance. 
Sequence Annotation
 DOMAIN 142 352 B30.2/SPRY.
 ZN_FING 20 67 RING-type.  
Keyword
 Complete proteome; Cytoplasm; Metal-binding; Reference proteome; Zinc; Zinc-finger. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 352 AA 
Protein Sequence
MEVPELGPGL VERLEQLATC PLCGGPFEDP VLLACEHSFC RSCLARCWGS PAAPGSEEAT 60
PSCPCCGQPC PRRSLRSNVR LAVEVRISRG LREKLAEPGA RTGRRRGGRI PTMGCLDPQG 120
EDMRKTWRRF DVPVPKSSNS EEDLPEDYPV VKNMLHRLTA DLTLDPRTAH RDLLISSDYR 180
GVSLAPPGTP VPLDSPERFD RLRAVLGAQG FASGRHCWEV ETAEGACFRD SLAKDEDAGE 240
SCYAVGAAGE SVTRKGLIKL CPSEAIWAVE GRGGRLWALT APEPTLLGGA RPPPQRIRVD 300
LDWERGRVAF YDGRSLDLLF AFQAPGPLGE RVFPLLCTCD PRAPLRIVPG EA 352 
Gene Ontology
 GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
 GO:0008270; F:zinc ion binding; IEA:InterPro.
 GO:0048168; P:regulation of neuronal synaptic plasticity; NAS:RGD. 
Interpro
 IPR001870; B30.2/SPRY.
 IPR003879; Butyrophylin.
 IPR008985; ConA-like_lec_gl_sf.
 IPR006574; PRY.
 IPR003877; SPRY_rcpt.
 IPR001841; Znf_RING.
 IPR013083; Znf_RING/FYVE/PHD.
 IPR017907; Znf_RING_CS. 
Pfam
 PF00622; SPRY 
SMART
 SM00589; PRY
 SM00184; RING 
PROSITE
 PS50188; B302_SPRY
 PS00518; ZF_RING_1
 PS50089; ZF_RING_2 
PRINTS
 PR01407; BUTYPHLNCDUF.