CPLM 1.0 - Compendium of Protein Lysine Modification
Tag
Content
CPLM ID
CPLM-039058
UniProt Accession
F1LSC5_RAT
;
F1LSC5
Genbank Protein ID
AABR06012490
;
AABR06012491
Genbank Nucleotide ID
Protein Name
E3 ubiquitin-protein ligase TRIM23
Protein Synonyms/Alias
Gene Name
Trim23
Gene Synonyms/Alias
Created Date
July 27, 2013
Organism
Rattus norvegicus (Rat)
NCBI Taxa ID
10116
Lysine Modification
Position
Peptide
Type
References
8
MAALAVN
K
PGAGVDS
ubiquitination
[1]
Reference
[1] Synaptic protein ubiquitination in rat brain revealed by antibody-based ubiquitome analysis.
Na CH, Jones DR, Yang Y, Wang X, Xu Y, Peng J.
J Proteome Res. 2012 Sep 7;11(9):4722-32. [
PMID: 22871113
]
Functional Description
Sequence Annotation
Keyword
Complete proteome; GTP-binding; Metal-binding; Nucleotide-binding; Reference proteome; Zinc; Zinc-finger.
Sequence Source
UniProt (SWISSPROT/TrEMBL); GenBank; EMBL
Protein Length
573 AA
Protein Sequence
MAALAVNKPG AGVDSGRQGS RGTAVVKVLE CGVCEDVFSL QGDKVPRLLL CGHTVCHDCL 60
TRLPLHGRAI RCPFDRQVTD LGDSGVWGLK KNFALLELLE RLQNGHIGQY GAAEEALGIS 120
GESIIRCDED EAHVASVYCT VCATHLCSEC SQVTHSTKTL AKHRRVPLAD KPHEKTMCCQ 180
HQVHAIEFVC LEEACQTSPL MCCVCKEYGK HQGHKHSVLE PEANQIRASI LDMAHCIRTF 240
TEEISDYSRK LVGIVQHIEG GEQIVEDGIG MAHTEHVPGT AENARSCVRA YFSDLHETLC 300
RQEEMALSVV DAHVREKLIW LRQQQEDMTI LLSQVSTACL HCKTLQQDDC RVVLAKQEIT 360
RLLETLQKQQ QQFTEVADHI QLDASIPVTF TKDNRVHIGP KMEIRVVTLG LDGAGKTTIL 420
FKLKQDEFMQ PIPTIGFNVE TVEYKNLKFT IWDVGGKHKL RPLWKHYYLN TQAVVFVVDS 480
SHRDRISEAH SELAKLLTEK ELRDALLLIF ANKQDVAGAL SVEEITELLS LHKLCCGRSW 540
YIQGCDARSG MGLYEGLDWL SRQLVAAGVL DVA 573
Gene Ontology
GO:0000139
; C:Golgi membrane; IEA:Compara.
GO:0005765
; C:lysosomal membrane; IEA:Compara.
GO:0005634
; C:nucleus; IEA:Compara.
GO:0019003
; F:GDP binding; IEA:Compara.
GO:0005525
; F:GTP binding; IEA:UniProtKB-KW.
GO:0003924
; F:GTPase activity; IEA:Compara.
GO:0004842
; F:ubiquitin-protein ligase activity; IEA:Compara.
GO:0008270
; F:zinc ion binding; IEA:InterPro.
GO:0006184
; P:GTP catabolic process; IEA:GOC.
GO:0007264
; P:small GTPase mediated signal transduction; IEA:InterPro.
Interpro
IPR003649
; Bbox_C.
IPR027417
; P-loop_NTPase.
IPR005225
; Small_GTP-bd_dom.
IPR024156
; Small_GTPase_ARF.
IPR006689
; Small_GTPase_ARF/SAR.
IPR000315
; Znf_B-box.
IPR007087
; Znf_C2H2.
IPR001841
; Znf_RING.
IPR013083
; Znf_RING/FYVE/PHD.
IPR017907
; Znf_RING_CS.
Pfam
PF00025
; Arf
PF00643
; zf-B_box
SMART
SM00177
; ARF
SM00502
; BBC
SM00336
; BBOX
SM00184
; RING
PROSITE
PS51417
; ARF
PS50119
; ZF_BBOX
PS00518
; ZF_RING_1
PS50089
; ZF_RING_2
PS50157
; ZINC_FINGER_C2H2_2
PRINTS
PR00328
; SAR1GTPBP.