CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-000229
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Lipid phosphate phosphohydrolase 3 
Protein Synonyms/Alias
 PAP2-beta; Phosphatidate phosphohydrolase type 2b; Phosphatidic acid phosphatase 2b; PAP-2b; PAP2b; Vascular endothelial growth factor and type I collagen-inducible protein; VCIP 
Gene Name
 PPAP2B 
Gene Synonyms/Alias
 LPP3 
Created Date
 July 27, 2013 
Organism
 Homo sapiens (Human) 
NCBI Taxa ID
 9606 
Lysine Modification
Position
Peptide
Type
References
15KAIVPESKNGGSPALubiquitination[1, 2, 3]
293LPAPAIRKEILSPVDubiquitination[1]
Reference
 [1] Systematic and quantitative assessment of the ubiquitin-modified proteome.
 Kim W, Bennett EJ, Huttlin EL, Guo A, Li J, Possemato A, Sowa ME, Rad R, Rush J, Comb MJ, Harper JW, Gygi SP.
 Mol Cell. 2011 Oct 21;44(2):325-40. [PMID: 21906983]
 [2] Global identification of modular cullin-RING ligase substrates.
 Emanuele MJ, Elia AE, Xu Q, Thoma CR, Izhar L, Leng Y, Guo A, Chen YN, Rush J, Hsu PW, Yen HC, Elledge SJ.
 Cell. 2011 Oct 14;147(2):459-74. [PMID: 21963094]
 [3] Ubiquitin ligase substrate identification through quantitative proteomics at both the protein and peptide levels.
 Lee KA, Hammerle LP, Andrews PS, Stokes MP, Mustelin T, Silva JC, Black RA, Doedens JR.
 J Biol Chem. 2011 Dec 2;286(48):41530-8. [PMID: 21987572
Functional Description
 Catalyzes the conversion of phosphatidic acid (PA) to diacylglycerol (DG). In addition it hydrolyzes lysophosphatidic acid (LPA), ceramide-1-phosphate (C-1-P) and sphingosine-1- phosphate (S-1-P). The relative catalytic efficiency is LPA = PA > C-1-P > S-1-P. May be involved in cell adhesion and in cell-cell interactions. 
Sequence Annotation
 MOD_RES 19 19 Phosphoserine.
 MOD_RES 297 297 Phosphoserine.
 CARBOHYD 170 170 N-linked (GlcNAc...) (Potential).  
Keyword
 Cell membrane; Complete proteome; Glycoprotein; Golgi apparatus; Hydrolase; Membrane; Phosphoprotein; Reference proteome; Transmembrane; Transmembrane helix. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 311 AA 
Protein Sequence
MQNYKYDKAI VPESKNGGSP ALNNNPRRSG SKRVLLICLD LFCLFMAGLP FLIIETSTIK 60
PYHRGFYCND ESIKYPLKTG ETINDAVLCA VGIVIAILAI ITGEFYRIYY LKKSRSTIQN 120
PYVAALYKQV GCFLFGCAIS QSFTDIAKVS IGRLRPHFLS VCNPDFSQIN CSEGYIQNYR 180
CRGDDSKVQE ARKSFFSGHA SFSMYTMLYL VLYLQARFTW RGARLLRPLL QFTLIMMAFY 240
TGLSRVSDHK HHPSDVLAGF AQGALVACCI VFFVSDLFKT KTTLSLPAPA IRKEILSPVD 300
IIDRNNHHNM M 311 
Gene Ontology
 GO:0005912; C:adherens junction; TAS:BHF-UCL.
 GO:0005794; C:Golgi apparatus; IEA:UniProtKB-SubCell.
 GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
 GO:0005886; C:plasma membrane; TAS:Reactome.
 GO:0042577; F:lipid phosphatase activity; IEA:Compara.
 GO:0008195; F:phosphatidate phosphatase activity; IEA:EC.
 GO:0004721; F:phosphoprotein phosphatase activity; TAS:ProtInc.
 GO:0001568; P:blood vessel development; IEA:Compara.
 GO:0044329; P:canonical Wnt receptor signaling pathway involved in positive regulation of cell-cell adhesion; IMP:BHF-UCL.
 GO:0044328; P:canonical Wnt receptor signaling pathway involved in positive regulation of endothelial cell migration; IMP:BHF-UCL.
 GO:0044330; P:canonical Wnt receptor signaling pathway involved in positive regulation of wound healing; IMP:BHF-UCL.
 GO:0001702; P:gastrulation with mouth forming second; IEA:Compara.
 GO:0008354; P:germ cell migration; TAS:ProtInc.
 GO:0034109; P:homotypic cell-cell adhesion; IDA:BHF-UCL.
 GO:0001933; P:negative regulation of protein phosphorylation; IDA:BHF-UCL.
 GO:0006644; P:phospholipid metabolic process; IEA:Compara.
 GO:0050731; P:positive regulation of peptidyl-tyrosine phosphorylation; IEA:Compara.
 GO:0051091; P:positive regulation of sequence-specific DNA binding transcription factor activity; IDA:BHF-UCL.
 GO:0050821; P:protein stabilization; IDA:BHF-UCL.
 GO:0030111; P:regulation of Wnt receptor signaling pathway; IEA:Compara.
 GO:0044281; P:small molecule metabolic process; TAS:Reactome.
 GO:0030148; P:sphingolipid biosynthetic process; TAS:Reactome. 
Interpro
 IPR016118; P_Acid_Pase/Cl_peroxidase_N.
 IPR000326; P_Acid_Pase_2/haloperoxidase. 
Pfam
 PF01569; PAP2 
SMART
 SM00014; acidPPc 
PROSITE
  
PRINTS