| Tag | Content |
|---|
| CPLM ID | CPLM-017903 |
UniProt Accession | |
Genbank Protein ID | |
Genbank Nucleotide ID | |
Protein Name | Small RNA degrading nuclease 3 |
Protein Synonyms/Alias | |
Gene Name | SDN3 |
Gene Synonyms/Alias | At5g67240; K21H1.20 |
Created Date | July 27, 2013 |
Organism | Arabidopsis thaliana (Mouse-ear cress) |
NCBI Taxa ID | 3702 |
Lysine Modification | Position | Peptide | Type | References |
|---|
| 190 | DKPVIDYKTDITGVT | ubiquitination | [1] | | 726 | LKEMEELKEKLKAME | ubiquitination | [1] |
|
Reference | [1] Multidimensional protein identification technology (MudPIT) analysis of ubiquitinated proteins in plants. Maor R, Jones A, Nühse TS, Studholme DJ, Peck SC, Shirasu K. Mol Cell Proteomics. 2007 Apr;6(4):601-10. [ PMID: 17272265] |
Functional Description | 3'-5' exonuclease degrading single-stranded small RNAs. |
Sequence Annotation | DOMAIN 145 296 Exonuclease.
DOMAIN 331 410 RRM 1.
DOMAIN 469 549 RRM 2.
DOMAIN 608 688 RRM 3.
CROSSLNK 190 190 Glycyl lysine isopeptide (Lys-Gly)
CROSSLNK 726 726 Glycyl lysine isopeptide (Lys-Gly) |
Keyword | Alternative splicing; Coiled coil; Complete proteome; Exonuclease; Hydrolase; Isopeptide bond; Nuclease; Nucleus; Reference proteome; Repeat; RNA-binding; Transcription; Transcription regulation; Ubl conjugation. |
Sequence Source | UniProt (SWISSPROT/TrEMBL); GenBank; EMBL |
Protein Length | 782 AA |
Protein Sequence | MEHKLATAEK KLLVDLVKLV QKRGLEGENG GWKEFLNVYD KKLGSSLSDP ARRSNDVLVA 60
FLLTFKKKED LQLIARVMQC GANRELIEKF KQETPDKETP EQRLVRLTIT HDDYPGNYTF 120
PSYAEDWYVT ELGKKKSKVI KSTRMLSIDC EMVTCEDGSQ ALVRVGAVDR DLKVVLDKFV 180
KPDKPVIDYK TDITGVTAED LERATLSVAD IQKKLRRFLS VGTILVGHGL HNDLQVLRID 240
HARVIDTSYV FEFVDAPKTQ RPSLNNLCKS VLGQEVRMDG AAHNCVHDAA AAMKLVLAAV 300
EKGAATLIQP TEEMMVAEKR RQEARQEAGK AQLFLHKIPH DVPSEELHGV LSGNFTLVVK 360
PPKTGGYSTA VVDFSSPEEA NEAFENVEGD VAKDKSGLPQ KKAVLKLSSG LAVSLFVRKM 420
VQDDSPCEIS TSERARAEEN NVSSKRQKTE DETEETKEAT VNQREADKTK LFLHKIPHDV 480
PSQELHGVLN GDFTLDVKPP KRKGGYYNAV VDFNSPEEAN EAFENVEGDV VKDKTGLPQK 540
MVVFKLSSGS GVSLYVRKMV HDDSPGEIST TKRARTEESN MSSKRQKTED ESEETKEANA 600
KQREADKTKL LLHKIPLNVP SQELKVVITG QFTLEVMPPK RKGRYYNAVV TFNSPEEANK 660
AFEKVKGEAV KEKGGLAQKM VAFKLSSGSG ACLYVRKMVQ DESEETKEAN ANHCEDDHLK 720
EMEELKEKLK AMEFAISCEG HSKEIEELKQ KLNAKEHQIQ AQDKIIANLK MKLEKKQSKS 780
RS 782 |
Gene Ontology | GO:0016592; C:mediator complex; IDA:UniProtKB. GO:0004527; F:exonuclease activity; IEA:UniProtKB-KW. GO:0000166; F:nucleotide binding; IEA:InterPro. GO:0003723; F:RNA binding; IEA:UniProtKB-KW. GO:0090305; P:nucleic acid phosphodiester bond hydrolysis; IEA:GOC. GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW. GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW. |
Interpro | |
Pfam | |
SMART | |
PROSITE | |
PRINTS | |