CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-002396
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 NADP-dependent malic enzyme 
Protein Synonyms/Alias
 NADP-ME; Malic enzyme 1 
Gene Name
 Me1 
Gene Synonyms/Alias
 Mod-1; Mod1 
Created Date
 July 27, 2013 
Organism
 Mus musculus (Mouse) 
NCBI Taxa ID
 10090 
Lysine Modification
Position
Peptide
Type
References
26TRDPHLNKDLAFTLEubiquitination[1]
60LQVLRIIKNFERLNSubiquitination[1]
324MEKEGLSKENARKKIacetylation[2]
330SKENARKKIWLVDSKacetylation[3]
330SKENARKKIWLVDSKubiquitination[1]
337KIWLVDSKGLIVKGRacetylation[4]
337KIWLVDSKGLIVKGRubiquitination[1]
351RASLTEEKEVFAHEHacetylation[2]
362AHEHEEMKNLEAIVQacetylation[5]
362AHEHEEMKNLEAIVQubiquitination[1]
422CSAEQCYKVTKGRAIacetylation[2]
422CSAEQCYKVTKGRAIubiquitination[1]
476GLRHIDDKVFLTTAEubiquitination[1]
492ISQQVSDKHLQEGRLubiquitination[1]
516VSLKIAVKIVQDAYKubiquitination[1]
523KIVQDAYKEKMATVYacetylation[2, 5]
523KIVQDAYKEKMATVYubiquitination[1]
525VQDAYKEKMATVYPEubiquitination[1]
Reference
 [1] Proteomic analyses reveal divergent ubiquitylation site patterns in murine tissues.
 Wagner SA, Beli P, Weinert BT, Schölz C, Kelstrup CD, Young C, Nielsen ML, Olsen JV, Brakebusch C, Choudhary C.
 Mol Cell Proteomics. 2012 Dec;11(12):1578-85. [PMID: 22790023]
 [2] Calorie restriction and SIRT3 trigger global reprogramming of the mitochondrial protein acetylome.
 Hebert AS, Dittenhafer-Reed KE, Yu W, Bailey DJ, Selen ES, Boersma MD, Carson JJ, Tonelli M, Balloon AJ, Higbee AJ, Westphall MS, Pagliarini DJ, Prolla TA, Assadi-Porter F, Roy S, Denu JM, Coon JJ.
 Mol Cell. 2013 Jan 10;49(1):186-99. [PMID: 23201123]
 [3] Quantitative acetylome analysis reveals the roles of SIRT1 in regulating diverse substrates and cellular pathways.
 Chen Y, Zhao W, Yang JS, Cheng Z, Luo H, Lu Z, Tan M, Gu W, Zhao Y.
 Mol Cell Proteomics. 2012 Oct;11(10):1048-62. [PMID: 22826441]
 [4] Proteomic investigations of lysine acetylation identify diverse substrates of mitochondrial deacetylase sirt3.
 Sol EM, Wagner SA, Weinert BT, Kumar A, Kim HS, Deng CX, Choudhary C.
 PLoS One. 2012;7(12):e50545. [PMID: 23236377]
 [5] Quantitative assessment of the impact of the gut microbiota on lysine epsilon-acetylation of host proteins using gnotobiotic mice.
 Simon GM, Cheng J, Gordon JI.
 Proc Natl Acad Sci U S A. 2012 Jul 10;109(28):11133-8. [PMID: 22733758
Functional Description
  
Sequence Annotation
 NP_BIND 301 318 NADP (By similarity).
 ACT_SITE 102 102 Proton donor (By similarity).
 ACT_SITE 173 173 Proton acceptor (By similarity).
 METAL 245 245 Divalent metal cation (By similarity).
 METAL 246 246 Divalent metal cation (By similarity).
 METAL 269 269 Divalent metal cation (By similarity).
 BINDING 155 155 NADP (By similarity).
 BINDING 269 269 NADP (By similarity).
 MOD_RES 1 1 N-acetylmethionine (By similarity).  
Keyword
 Acetylation; Complete proteome; Cytoplasm; Direct protein sequencing; Metal-binding; NADP; Oxidoreductase; Reference proteome. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 572 AA 
Protein Sequence
MEPRAPRRRH THQRGYLLTR DPHLNKDLAF TLEERQQLNI HGLLPPCIIS QELQVLRIIK 60
NFERLNSDFD RYLLLMDLQD RNEKLFYSVL MSDVEKFMPI VYTPTVGLAC QQYSLAFRKP 120
RGLFISIHDK GHIASVLNAW PEDVVKAIVV TDGERILGLG DLGCNGMGIP VGKLALYTAC 180
GGVNPQQCLP ITLDVGTENE ELLKDPLYIG LRHRRVRGPE YDAFLDEFME AASSKYGMNC 240
LIQFEDFANR NAFRLLNKYR NKYCTFNDDI QGTASVAVAG LLAALRITKN KLSDQTVLFQ 300
GAGEAALGIA HLVVMAMEKE GLSKENARKK IWLVDSKGLI VKGRASLTEE KEVFAHEHEE 360
MKNLEAIVQK IKPTALIGVA AIGGAFTEQI LKDMAAFNER PIIFALSNPT SKAECSAEQC 420
YKVTKGRAIF ASGSPFDPVT LPDGRTLFPG QGNNSYVFPG VALGVVACGL RHIDDKVFLT 480
TAEVISQQVS DKHLQEGRLY PPLNTIRGVS LKIAVKIVQD AYKEKMATVY PEPQNKEEFV 540
SSQMYSTNYD QILPDCYPWP AEVQKIQTKV NQ 572 
Gene Ontology
 GO:0005829; C:cytosol; ISS:UniProtKB.
 GO:0005739; C:mitochondrion; IDA:MGI.
 GO:0004473; F:malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity; ISS:UniProtKB.
 GO:0016619; F:malate dehydrogenase (oxaloacetate-decarboxylating) activity; IEA:InterPro.
 GO:0030145; F:manganese ion binding; ISS:UniProtKB.
 GO:0051287; F:NAD binding; IEA:InterPro.
 GO:0006108; P:malate metabolic process; ISS:UniProtKB.
 GO:0051262; P:protein tetramerization; IDA:MGI.
 GO:0009725; P:response to hormone stimulus; ISS:UniProtKB. 
Interpro
 IPR015884; Malic_enzyme_CS.
 IPR012301; Malic_N.
 IPR012302; Malic_NAD-bd.
 IPR001891; Malic_OxRdtase.
 IPR016040; NAD(P)-bd_dom. 
Pfam
 PF00390; malic
 PF03949; Malic_M 
SMART
 SM00919; Malic_M 
PROSITE
 PS00331; MALIC_ENZYMES 
PRINTS
 PR00072; MALOXRDTASE.