CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-007157
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 ULP1-interacting protein 3 
Protein Synonyms/Alias
 DUP240 protein UIP3 
Gene Name
 UIP3 
Gene Synonyms/Alias
 YAR027W; FUN55 
Created Date
 July 27, 2013 
Organism
 Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) 
NCBI Taxa ID
 559292 
Lysine Modification
Position
Peptide
Type
References
11PSENTDVKLDTLDEPubiquitination[1, 2, 3]
218IKAAEIHKEAEFEYWubiquitination[1, 2, 3, 4, 5]
227AEFEYWRKQYPEVDLubiquitination[4, 5]
Reference
 [1] A proteomics approach to understanding protein ubiquitination.
 Peng J, Schwartz D, Elias JE, Thoreen CC, Cheng D, Marsischky G, Roelofs J, Finley D, Gygi SP.
 Nat Biotechnol. 2003 Aug;21(8):921-6. [PMID: 12872131]
 [2] Computational identification of ubiquitylation sites from protein sequences.
 Tung CW, Ho SY.
 BMC Bioinformatics. 2008 Jul 15;9:310. [PMID: 18625080]
 [3] Identification, analysis, and prediction of protein ubiquitination sites.
 Radivojac P, Vacic V, Haynes C, Cocklin RR, Mohan A, Heyen JW, Goebl MG, Iakoucheva LM.
 Proteins. 2010 Feb 1;78(2):365-80. [PMID: 19722269]
 [4] Sites of ubiquitin attachment in Saccharomyces cerevisiae.
 Starita LM, Lo RS, Eng JK, von Haller PD, Fields S.
 Proteomics. 2012 Jan;12(2):236-40. [PMID: 22106047]
 [5] Global analysis of phosphorylation and ubiquitylation cross-talk in protein degradation.
 Swaney DL, Beltrao P, Starita L, Guo A, Rush J, Fields S, Krogan NJ, Villén J.
 Nat Methods. 2013 Jul;10(7):676-82. [PMID: 23749301] 
Functional Description
  
Sequence Annotation
 CROSSLNK 11 11 Glycyl lysine isopeptide (Lys-Gly)
 CROSSLNK 218 218 Glycyl lysine isopeptide (Lys-Gly)  
Keyword
 Cell membrane; Complete proteome; Isopeptide bond; Membrane; Nucleus; Reference proteome; Transmembrane; Transmembrane helix; Ubl conjugation. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 235 AA 
Protein Sequence
MQTPSENTDV KLDTLDEPSA HLIEENVALP EDTFNSYWSY ILNEIARCKP LMIMFLIPVC 60
LVLLITFFHD IKGILVFLVI SLILSIIILL IGITAFVSET LNKGFIIKLL VEVITRKPAV 120
GGKEWRIIAY NMNQYLFDHG IWHTPYYFFC EHRCHKFFKS LIKQTRSNAH LSSPTNGAEN 180
TQSNTPAKEV SNEMVKPYIF SSDPVLEAYL IKAAEIHKEA EFEYWRKQYP EVDLP 235 
Gene Ontology
 GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
 GO:0005635; C:nuclear envelope; IDA:SGD.
 GO:0031965; C:nuclear membrane; IEA:UniProtKB-SubCell.
 GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. 
Interpro
 IPR001142; DUP. 
Pfam
 PF00674; DUP 
SMART
  
PROSITE
  
PRINTS