CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-002995
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Dihydroorotate dehydrogenase (quinone) 
Protein Synonyms/Alias
 DHOdehase; DHOD; DHODase; Dihydroorotate oxidase 
Gene Name
 pyrD 
Gene Synonyms/Alias
 b0945; JW0928 
Created Date
 July 27, 2013 
Organism
 Escherichia coli (strain K12) 
NCBI Taxa ID
 83333 
Lysine Modification
Position
Peptide
Type
References
128DNLVENVKKAHYDGVacetylation[1]
144GINIGKNKDTPVEQGacetylation[1]
152DTPVEQGKDDYLICMacetylation[1]
210DLQAMHHKYVPIAVKacetylation[1]
258RSLVQGMKNCDQTGGacetylation[1]
330FKGPPLIKEIVTHI*acetylation[1]
Reference
 [1] Acetyl-Phosphate Is a Critical Determinant of Lysine Acetylation in E. coli.
 Weinert BT, Iesmantavicius V, Wagner SA, Schölz C, Gummesson B, Beli P, Nyström T, Choudhary C.
 Mol Cell. 2013 Jul 25;51(2):265-72. [PMID: 23830618
Functional Description
 Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor. 
Sequence Annotation
 NP_BIND 62 66 FMN.
 NP_BIND 318 319 FMN.
 REGION 111 115 Substrate binding.
 REGION 246 247 Substrate binding.
 ACT_SITE 175 175 Nucleophile.
 BINDING 66 66 Substrate.
 BINDING 86 86 FMN; via amide nitrogen.
 BINDING 139 139 FMN.
 BINDING 172 172 FMN.
 BINDING 172 172 Substrate.
 BINDING 177 177 Substrate.
 BINDING 217 217 FMN.
 BINDING 245 245 FMN; via carbonyl oxygen.
 BINDING 268 268 FMN; via amide nitrogen.
 BINDING 297 297 FMN; via amide nitrogen.  
Keyword
 3D-structure; Cell membrane; Complete proteome; Direct protein sequencing; Flavoprotein; FMN; Membrane; Oxidoreductase; Pyrimidine biosynthesis; Reference proteome. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 336 AA 
Protein Sequence
MYYPFVRKAL FQLDPERAHE FTFQQLRRIT GTPFEALVRQ KVPAKPVNCM GLTFKNPLGL 60
AAGLDKDGEC IDALGAMGFG SIEIGTVTPR PQPGNDKPRL FRLVDAEGLI NRMGFNNLGV 120
DNLVENVKKA HYDGVLGINI GKNKDTPVEQ GKDDYLICME KIYAYAGYIA INISSPNTPG 180
LRTLQYGEAL DDLLTAIKNK QNDLQAMHHK YVPIAVKIAP DLSEEELIQV ADSLVRHNID 240
GVIATNTTLD RSLVQGMKNC DQTGGLSGRP LQLKSTEIIR RLSLELNGRL PIIGVGGIDS 300
VIAAREKIAA GASLVQIYSG FIFKGPPLIK EIVTHI 336 
Gene Ontology
 GO:0016020; C:membrane; IDA:EcoCyc.
 GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell.
 GO:0004152; F:dihydroorotate dehydrogenase activity; IDA:EcoCyc.
 GO:0004158; F:dihydroorotate oxidase activity; IEA:InterPro.
 GO:0010181; F:FMN binding; IDA:EcoCyc.
 GO:0006207; P:'de novo' pyrimidine nucleobase biosynthetic process; IMP:EcoCyc.
 GO:0044205; P:'de novo' UMP biosynthetic process; IEA:UniProtKB-UniPathway. 
Interpro
 IPR013785; Aldolase_TIM.
 IPR012135; Dihydroorotate_DH_1_2.
 IPR005719; Dihydroorotate_DH_2.
 IPR001295; Dihydroorotate_DH_CS. 
Pfam
 PF01180; DHO_dh 
SMART
  
PROSITE
 PS00911; DHODEHASE_1
 PS00912; DHODEHASE_2 
PRINTS