CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-033177
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
  
Protein Name
 pre-mRNA 3' end-processing protein WDR33 
Protein Synonyms/Alias
  
Gene Name
 WDR33 
Gene Synonyms/Alias
  
Created Date
 July 27, 2013 
Organism
 Homo sapiens (Human) 
NCBI Taxa ID
 9606 
Lysine Modification
Position
Peptide
Type
References
41RTSTNKVKCPVFVVRubiquitination[1]
118QSNMNNVKMFQAHKEubiquitination[1]
124VKMFQAHKEAIREASubiquitination[1, 2]
138SFSPTDNKFATCSDDubiquitination[1, 3, 4]
Reference
 [1] Refined preparation and use of anti-diglycine remnant (K-ε-GG) antibody enables routine quantification of 10,000s of ubiquitination sites in single proteomics experiments.
 Udeshi ND, Svinkina T, Mertins P, Kuhn E, Mani DR, Qiao JW, Carr SA.
 Mol Cell Proteomics. 2013 Mar;12(3):825-31. [PMID: 23266961]
 [2] Systematic and quantitative assessment of the ubiquitin-modified proteome.
 Kim W, Bennett EJ, Huttlin EL, Guo A, Li J, Possemato A, Sowa ME, Rad R, Rush J, Comb MJ, Harper JW, Gygi SP.
 Mol Cell. 2011 Oct 21;44(2):325-40. [PMID: 21906983]
 [3] Global identification of modular cullin-RING ligase substrates.
 Emanuele MJ, Elia AE, Xu Q, Thoma CR, Izhar L, Leng Y, Guo A, Chen YN, Rush J, Hsu PW, Yen HC, Elledge SJ.
 Cell. 2011 Oct 14;147(2):459-74. [PMID: 21963094]
 [4] Integrated proteomic analysis of post-translational modifications by serial enrichment.
 Mertins P, Qiao JW, Patel J, Udeshi ND, Clauser KR, Mani DR, Burgess MW, Gillette MA, Jaffe JD, Carr SA.
 Nat Methods. 2013 Jul;10(7):634-7. [PMID: 23749302
Functional Description
  
Sequence Annotation
  
Keyword
 Complete proteome; Reference proteome; Repeat; WD repeat. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 205 AA 
Protein Sequence
MRAIQPDAGY YNDLVPPIGM LNNPMNAVTT KFVRTSTNKV KCPVFVVRWT PEGRRLVTGA 60
SSGEFTLWNG LTFNFETILQ AHDSPVRAMT WSHNDMWMLT ADHGGYVKYW QSNMNNVKMF 120
QAHKEAIREA SFSPTDNKFA TCSDDGTVRI WDFLRCHEER ILRGHGADVK CVDWHPTKGL 180
VVSGSKDSQQ PIKFWDPKTG QSLAT 205 
Gene Ontology
  
Interpro
 IPR015943; WD40/YVTN_repeat-like_dom.
 IPR001680; WD40_repeat.
 IPR017986; WD40_repeat_dom. 
Pfam
 PF00400; WD40 
SMART
 SM00320; WD40 
PROSITE
 PS50082; WD_REPEATS_2
 PS50294; WD_REPEATS_REGION 
PRINTS