CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-041512
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Protein Pdxdc1 
Protein Synonyms/Alias
 Similar to expressed sequence AA415817 (Predicted) 
Gene Name
 Pdxdc1 
Gene Synonyms/Alias
 RGD1562597_predicted; rCG_49895 
Created Date
 July 27, 2013 
Organism
 Rattus norvegicus (Rat) 
NCBI Taxa ID
 10116 
Lysine Modification
Position
Peptide
Type
References
107AYISTLDKEKLRKLTacetylation[1]
Reference
 [1] Proteomic analysis of lysine acetylation sites in rat tissues reveals organ specificity and subcellular patterns.
 Lundby A, Lage K, Weinert BT, Bekker-Jensen DB, Secher A, Skovgaard T, Kelstrup CD, Dmytriyev A, Choudhary C, Lundby C, Olsen JV.
 Cell Rep. 2012 Aug 30;2(2):419-31. [PMID: 22902405] 
Functional Description
  
Sequence Annotation
  
Keyword
 Complete proteome; Lyase; Pyridoxal phosphate; Reference proteome. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 785 AA 
Protein Sequence
MDASLEKIAD PTLAEMGKNL KEAMRMLENS PRRIEEESGK KPVPEDIPGP LQGSGQDMVS 60
ILQLVQNLMH GDEDEEPQST RIQNIGEQGH MALLGHSLGA YISTLDKEKL RKLTTRILSD 120
TTLWLCRIFR YENGCAYFHE KEREGLAKIC RLAIHSRYED FVVDGFNVLY NKKPIIYLSA 180
AARPGLGPYL CNQLGLPFPC LCRVPCNTMF GSQHQMDVAF LEKLIKDDVE RGRLPLLLVA 240
NAGTAAVGHT DKIGRLKELC EQYGIWLHVE GVNLATLALG YVSSSVLAAT KCDSMTLTPG 300
LWLGLPAVPA VTLYKHDDPA LTLIAGLTSN KPADKLRALP LWLSLQYLGL DGIVGRIKHA 360
CQLSQRLQES LKKVDHIKIL VEDELSSPVV VFRFFQELPT LDPAFKVAAV SNIAAAAVGR 420
ERHSCDALNR WLGEQLKQLV PQCGLTVMDL DIDGTCVRFS PLMTAEALGT RGEDVDQLIT 480
CIQSKLPVLT CTLQLREEFK KEVEGTAGLL YVDDPNWPGI GVVRYEHAND DNTSLQSDPE 540
GEKIHTGLLK KLNELESDLT FKMGPEYKSM KSCIYIGMAS DDVDVSELVE TIAITAREIE 600
ENSRLLENMT EVVRKGIQEA QVQLQKANEE RLLEEGVLRQ IPVVGSVLNW FSPVQASQKG 660
RSFNLTAGSL ESTEYTYVYK VQGTGVTPPP TPSGTRSKQR LPGQKPFKRS LRSSDAVSET 720
SSVSHIEDLE KVEQLPSGLE HDNLEAQCPE QPCRAADPVA RQTEALQDEE DDHSQMGTRV 780
RRLKV 785 
Gene Ontology
 GO:0016831; F:carboxy-lyase activity; IEA:InterPro.
 GO:0030170; F:pyridoxal phosphate binding; IEA:InterPro.
 GO:0019752; P:carboxylic acid metabolic process; IEA:InterPro. 
Interpro
 IPR002129; PyrdxlP-dep_de-COase.
 IPR015424; PyrdxlP-dep_Trfase.
 IPR015421; PyrdxlP-dep_Trfase_major_sub1.
 IPR015422; PyrdxlP-dep_Trfase_major_sub2. 
Pfam
 PF00282; Pyridoxal_deC 
SMART
  
PROSITE
  
PRINTS