CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-015035
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Nucleoside diphosphate kinase 
Protein Synonyms/Alias
 NDK; NDP kinase; Nucleoside-2-P kinase 
Gene Name
 ndk 
Gene Synonyms/Alias
 RPA3056 
Created Date
 July 27, 2013 
Organism
 Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) 
NCBI Taxa ID
 258594 
Lysine Modification
Position
Peptide
Type
References
29AINALIEKAGLRIVAacetylation[1]
97MGATDPSKAADGTIRacetylation[1]
Reference
 [1] System-wide studies of N-lysine acetylation in Rhodopseudomonas palustris reveal substrate specificity of protein acetyltransferases.
 Crosby HA, Pelletier DA, Hurst GB, Escalante-Semerena JC.
 J Biol Chem. 2012 May 4;287(19):15590-601. [PMID: 22416131
Functional Description
 Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate (By similarity). 
Sequence Annotation
 ACT_SITE 117 117 Pros-phosphohistidine intermediate (By
 BINDING 11 11 ATP (By similarity).
 BINDING 59 59 ATP (By similarity).
 BINDING 87 87 ATP (By similarity).
 BINDING 93 93 ATP (By similarity).
 BINDING 104 104 ATP (By similarity).
 BINDING 114 114 ATP (By similarity).  
Keyword
 ATP-binding; Complete proteome; Cytoplasm; Kinase; Magnesium; Metal-binding; Nucleotide metabolism; Nucleotide-binding; Phosphoprotein; Transferase. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 140 AA 
Protein Sequence
MAIERTFSIL KPDATERNIT GAINALIEKA GLRIVAQKRI RMTRDQAETF YAVHKERPFF 60
GELVDFMISG PVVVQVLEGE GAIAKYRDVM GATDPSKAAD GTIRKLHAKS IGENSVHGSD 120
AAETAKIEIA QFFSGNEIVG 140 
Gene Ontology
 GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
 GO:0005524; F:ATP binding; IEA:HAMAP.
 GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
 GO:0004550; F:nucleoside diphosphate kinase activity; IEA:HAMAP.
 GO:0006241; P:CTP biosynthetic process; IEA:HAMAP.
 GO:0006183; P:GTP biosynthetic process; IEA:HAMAP.
 GO:0006228; P:UTP biosynthetic process; IEA:HAMAP. 
Interpro
 IPR001564; Nucleoside_diP_kinase. 
Pfam
 PF00334; NDK 
SMART
 SM00562; NDK 
PROSITE
 PS00469; NDP_KINASES 
PRINTS
 PR01243; NUCDPKINASE.