CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-017004
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 ATP-dependent (S)-NAD(P)H-hydrate dehydratase 
Protein Synonyms/Alias
 ATP-dependent NAD(P)HX dehydratase; Carbohydrate kinase domain-containing protein 
Gene Name
 CARKD 
Gene Synonyms/Alias
  
Created Date
 July 27, 2013 
Organism
 Homo sapiens (Human) 
NCBI Taxa ID
 9606 
Lysine Modification
Position
Peptide
Type
References
172QGILEVSKARDIPVVubiquitination[1]
200ALIHGYRKAVLTPNHubiquitination[1]
Reference
 [1] Refined preparation and use of anti-diglycine remnant (K-ε-GG) antibody enables routine quantification of 10,000s of ubiquitination sites in single proteomics experiments.
 Udeshi ND, Svinkina T, Mertins P, Kuhn E, Mani DR, Qiao JW, Carr SA.
 Mol Cell Proteomics. 2013 Mar;12(3):825-31. [PMID: 23266961
Functional Description
 Catalyzes the dehydration of the S-form of NAD(P)HX at the expense of ATP, which is converted to ADP. Together with NAD(P)HX epimerase, which catalyzes the epimerization of the S- and R-forms, the enzyme allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration (By similarity). 
Sequence Annotation
 DOMAIN 53 344 YjeF C-terminal.
 NP_BIND 246 250 ATP (By similarity).
 NP_BIND 265 274 ATP (By similarity).
 REGION 206 212 NAD(P)HX (By similarity).
 BINDING 153 153 NAD(P)HX; via amide nitrogen (By
 BINDING 275 275 NAD(P)HX (By similarity).
 MOD_RES 85 85 Phosphotyrosine (By similarity).
 CARBOHYD 240 240 N-linked (GlcNAc...).
 CARBOHYD 297 297 N-linked (GlcNAc...) (Potential).  
Keyword
 Alternative splicing; ATP-binding; Complete proteome; Glycoprotein; Lyase; Mitochondrion; NAD; NADP; Nucleotide-binding; Phosphoprotein; Polymorphism; Reference proteome; Transit peptide. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 347 AA 
Protein Sequence
MVTRAGAGTA VAGAVVVALL SAALALYGPP LDAVLERAFS LRKAHSIKDM ENTLQLVRNI 60
IPPLSSTKHK GQDGRIGVVG GCQEYTGAPY FAAISALKVG ADLSHVFCAS AAAPVIKAYS 120
PELIVHPVLD SPNAVHEVEK WLPRLHALVV GPGLGRDDAL LRNVQGILEV SKARDIPVVI 180
DADGLWLVAQ QPALIHGYRK AVLTPNHVEF SRLYDAVLRG PMDSDDSHGS VLRLSQALGN 240
VTVVQKGERD ILSNGQQVLV CSQEGSSRRC GGQGDLLSGS LGVLVHWALL AGPQKTNGGI 300
SDLKLTIWGP EIETGVKTRA QGSCGPRTTT PTSPHLLLSP SPQVQPSPGG RVWRLLSHQA 360
VQPPSLPEAR SLHHHLRHDR RGGGRLQQAL 390 
Gene Ontology
 GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.
 GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
 GO:0047453; F:ATP-dependent NAD(P)H-hydrate dehydratase activity; IEA:HAMAP.
 GO:0046496; P:nicotinamide nucleotide metabolic process; IEA:HAMAP. 
Interpro
 IPR026599; NnrD/CARKD.
 IPR000631; YjeF_C_carb_kinase-rel. 
Pfam
 PF01256; Carb_kinase 
SMART
  
PROSITE
 PS01049; YJEF_C_1
 PS01050; YJEF_C_2
 PS51383; YJEF_C_3 
PRINTS