CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-004868
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 DNA-directed RNA polymerases I, II, and III subunit RPABC3 
Protein Synonyms/Alias
 RNA polymerases I, II, and III subunit ABC3; ABC14.4; ABC14.5; DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide 
Gene Name
 RPB8 
Gene Synonyms/Alias
 YOR224C; YOR50-14 
Created Date
 July 27, 2013 
Organism
 Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) 
NCBI Taxa ID
 559292 
Lysine Modification
Position
Peptide
Type
References
136YRNLNNLKQENAYLLubiquitination[1]
Reference
 [1] Global analysis of phosphorylation and ubiquitylation cross-talk in protein degradation.
 Swaney DL, Beltrao P, Starita L, Guo A, Rush J, Fields S, Krogan NJ, VillĂ©n J.
 Nat Methods. 2013 Jul;10(7):676-82. [PMID: 23749301
Functional Description
 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non-coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. 
Sequence Annotation
 REGION 16 39 Non-specific ssDNA binding (By
 MOD_RES 68 68 Phosphothreonine.  
Keyword
 3D-structure; Complete proteome; DNA-binding; DNA-directed RNA polymerase; Nucleus; Phosphoprotein; Reference proteome; Transcription. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 146 AA 
Protein Sequence
MSNTLFDDIF QVSEVDPGRY NKVCRIEAAS TTQDQCKLTL DINVELFPVA AQDSLTVTIA 60
SSLNLEDTPA NDSSATRSWR PPQAGDRSLA DDYDYVMYGT AYKFEEVSKD LIAVYYSFGG 120
LLMRLEGNYR NLNNLKQENA YLLIRR 146 
Gene Ontology
 GO:0005736; C:DNA-directed RNA polymerase I complex; IDA:SGD.
 GO:0005665; C:DNA-directed RNA polymerase II, core complex; IDA:SGD.
 GO:0005666; C:DNA-directed RNA polymerase III complex; IDA:SGD.
 GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
 GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
 GO:0006360; P:transcription from RNA polymerase I promoter; IDA:SGD.
 GO:0006366; P:transcription from RNA polymerase II promoter; IPI:SGD.
 GO:0042797; P:tRNA transcription from RNA polymerase III promoter; IDA:SGD. 
Interpro
 IPR012340; NA-bd_OB-fold.
 IPR005570; RNA_pol_Rpb8. 
Pfam
 PF03870; RNA_pol_Rpb8 
SMART
 SM00658; RPOL8c 
PROSITE
  
PRINTS