CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-022304
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 H/ACA ribonucleoprotein complex subunit 2 
Protein Synonyms/Alias
 Nucleolar protein family A member 2; snoRNP protein NHP2 
Gene Name
 NHP2 
Gene Synonyms/Alias
 NOLA2; HSPC286 
Created Date
 July 27, 2013 
Organism
 Homo sapiens (Human) 
NCBI Taxa ID
 9606 
Lysine Modification
Position
Peptide
Type
References
5***MTKIKADPDGPEsumoylation[1, 2, 3, 4]
5***MTKIKADPDGPEubiquitination[5]
56KCIKKAVKQKQIRRGmethylation[6]
111PYVYIPSKTDLGAAAubiquitination[5]
Reference
 [1] A proteomic screen for nucleolar SUMO targets shows SUMOylation modulates the function of Nop5/Nop58.
 Westman BJ, Verheggen C, Hutten S, Lam YW, Bertrand E, Lamond AI.
 Mol Cell. 2010 Aug 27;39(4):618-31. [PMID: 20797632]
 [2] Site-specific identification of SUMO-2 targets in cells reveals an inverted SUMOylation motif and a hydrophobic cluster SUMOylation motif.
 Matic I, Schimmel J, Hendriks IA, van Santen MA, van de Rijke F, van Dam H, Gnad F, Mann M, Vertegaal AC.
 Mol Cell. 2010 Aug 27;39(4):641-52. [PMID: 20797634]
 [3] A role for SUMOylation in snoRNP biogenesis revealed by quantitative proteomics.
 Westman BJ, Lamond AI.
 Nucleus. 2011 Jan-Feb;2(1):30-7. [PMID: 21647297]
 [4] Targeted identification of SUMOylation sites in human proteins using affinity enrichment and paralog-specific reporter ions.
 Lamoliatte F, Bonneil E, Durette C, Caron-Lizotte O, Wildemann D, Zerweck J, Wenschuh H, Thibault P.
 Mol Cell Proteomics. 2013 Jun 7;. [PMID: 23750026]
 [5] Refined preparation and use of anti-diglycine remnant (K-ε-GG) antibody enables routine quantification of 10,000s of ubiquitination sites in single proteomics experiments.
 Udeshi ND, Svinkina T, Mertins P, Kuhn E, Mani DR, Qiao JW, Carr SA.
 Mol Cell Proteomics. 2013 Mar;12(3):825-31. [PMID: 23266961]
 [6] Mass spectrometry-based identification and characterisation of lysine and arginine methylation in the human proteome.
 Bremang M, Cuomo A, Agresta AM, Stugiewicz M, Spadotto V, Bonaldi T.
 Mol Biosyst. 2013 Jul 30;9(9):2231-47. [PMID: 23748837
Functional Description
 Required for ribosome biogenesis and telomere maintenance. Part of the H/ACA small nucleolar ribonucleoprotein (H/ACA snoRNP) complex, which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Each rRNA can contain up to 100 pseudouridine ("psi") residues, which may serve to stabilize the conformation of rRNAs. May also be required for correct processing or intranuclear trafficking of TERC, the RNA component of the telomerase reverse transcriptase (TERT) holoenzyme. 
Sequence Annotation
 MOD_RES 19 19 Phosphoserine.
 CROSSLNK 5 5 Glycyl lysine isopeptide (Lys-Gly)  
Keyword
 Complete proteome; Disease mutation; Dyskeratosis congenita; Isopeptide bond; Nucleus; Phosphoprotein; Polymorphism; Reference proteome; Ribonucleoprotein; Ribosome biogenesis; RNA-binding; rRNA processing; Ubl conjugation. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 153 AA 
Protein Sequence
MTKIKADPDG PEAQAEACSG ERTYQELLVN QNPIAQPLAS RRLTRKLYKC IKKAVKQKQI 60
RRGVKEVQKF VNKGEKGIMV LAGDTLPIEV YCHLPVMCED RNLPYVYIPS KTDLGAAAGS 120
KRPTCVIMVK PHEEYQEAYD ECLEEVQSLP LPL 153 
Gene Ontology
 GO:0015030; C:Cajal body; IEA:UniProtKB-SubCell.
 GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
 GO:0005732; C:small nucleolar ribonucleoprotein complex; ISS:UniProtKB.
 GO:0030515; F:snoRNA binding; ISS:UniProtKB.
 GO:0031118; P:rRNA pseudouridine synthesis; ISS:UniProtKB. 
Interpro
 IPR002415; H/ACA_rnp_Nhp2_euk.
 IPR004038; Ribosomal_L7Ae/L30e/S12e/Gad45.
 IPR018492; Ribosomal_L7Ae/L8/Nhp2. 
Pfam
 PF01248; Ribosomal_L7Ae 
SMART
  
PROSITE
 PS01082; RIBOSOMAL_L7AE 
PRINTS
 PR00881; L7ARS6FAMILY.
 PR00883; NUCLEARHMG.