CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-007713
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Casein kinase II subunit beta 
Protein Synonyms/Alias
 CK II beta 
Gene Name
 CKB1 
Gene Synonyms/Alias
 YGL019W 
Created Date
 July 27, 2013 
Organism
 Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) 
NCBI Taxa ID
 559292 
Lysine Modification
Position
Peptide
Type
References
110DEGKRRNKSPVVNKSubiquitination[1]
116NKSPVVNKSIIEHAAubiquitination[1]
138HARFILTKPGLQAMAacetylation[2]
138HARFILTKPGLQAMAubiquitination[3]
Reference
 [1] Identification, analysis, and prediction of protein ubiquitination sites.
 Radivojac P, Vacic V, Haynes C, Cocklin RR, Mohan A, Heyen JW, Goebl MG, Iakoucheva LM.
 Proteins. 2010 Feb 1;78(2):365-80. [PMID: 19722269]
 [2] Proteome-wide analysis of lysine acetylation suggests its broad regulatory scope in Saccharomyces cerevisiae.
 Henriksen P, Wagner SA, Weinert BT, Sharma S, Bacinskaja G, Rehman M, Juffer AH, Walther TC, Lisby M, Choudhary C.
 Mol Cell Proteomics. 2012 Nov;11(11):1510-22. [PMID: 22865919]
 [3] Global analysis of phosphorylation and ubiquitylation cross-talk in protein degradation.
 Swaney DL, Beltrao P, Starita L, Guo A, Rush J, Fields S, Krogan NJ, VillĂ©n J.
 Nat Methods. 2013 Jul;10(7):676-82. [PMID: 23749301
Functional Description
 Plays a complex role in regulating the basal catalytic activity of the alpha subunit (By similarity). 
Sequence Annotation
 MOD_RES 2 2 N-acetylserine.
 MOD_RES 2 2 Phosphoserine.  
Keyword
 Acetylation; Complete proteome; Direct protein sequencing; Phosphoprotein; Reference proteome. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 278 AA 
Protein Sequence
MSQEFVEDYS RTGSSDDEDS GAYDEWIPSF CSRFGHEYFC QVPTEFIEDD FNMTSLSQEV 60
PHYRKALDLI LDLEAMSDEE EDEDDVVEED EVDQEMQSND GHDEGKRRNK SPVVNKSIIE 120
HAAEQLYGLI HARFILTKPG LQAMAEKFDH KEFGTCPRYY CNGMQLLPCG LSDTVGKHTV 180
RLYCPSCQDL YLPQSSRFLC LEGAFWGTSF PGVFLKHFKE LEEYVERKSK ESYELKVFGF 240
RINDEAVSGP RMKWLRQYPS TEEDWEEFAK CEFETPAV 278 
Gene Ontology
 GO:0005956; C:protein kinase CK2 complex; IDA:SGD.
 GO:0034456; C:UTP-C complex; IDA:SGD.
 GO:0030291; F:protein serine/threonine kinase inhibitor activity; IDA:SGD.
 GO:0006468; P:protein phosphorylation; IDA:SGD.
 GO:0006356; P:regulation of transcription from RNA polymerase I promoter; IDA:SGD.
 GO:0006359; P:regulation of transcription from RNA polymerase III promoter; IDA:SGD.
 GO:0006974; P:response to DNA damage stimulus; IDA:SGD. 
Interpro
 IPR016149; Casein_kin_II_reg-sub_a-hlx.
 IPR016150; Casein_kin_II_reg-sub_b-sht.
 IPR000704; Casein_kinase_II_reg-sub. 
Pfam
 PF01214; CK_II_beta 
SMART
 SM01085; CK_II_beta 
PROSITE
 PS01101; CK2_BETA 
PRINTS
 PR00472; CASNKINASEII.