CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-031983
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 cDNA FLJ56906, highly similar to RNA-binding protein 16 
Protein Synonyms/Alias
  
Gene Name
  
Gene Synonyms/Alias
  
Created Date
 July 27, 2013 
Organism
 Homo sapiens (Human) 
NCBI Taxa ID
 9606 
Lysine Modification
Position
Peptide
Type
References
197RVLNLWQKNNVFKSEubiquitination[1, 2]
Reference
 [1] Systems-wide analysis of ubiquitylation dynamics reveals a key role for PAF15 ubiquitylation in DNA-damage bypass.
 Povlsen LK, Beli P, Wagner SA, Poulsen SL, Sylvestersen KB, Poulsen JW, Nielsen ML, Bekker-Jensen S, Mailand N, Choudhary C.
 Nat Cell Biol. 2012 Oct;14(10):1089-98. [PMID: 23000965]
 [2] hCKSAAP_UbSite: improved prediction of human ubiquitination sites by exploiting amino acid pattern and properties.
 Chen Z, Zhou Y, Song J, Zhang Z.
 Biochim Biophys Acta. 2013 Aug;1834(8):1461-7. [PMID: 23603789
Functional Description
  
Sequence Annotation
  
Keyword
  
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 1349 AA 
Protein Sequence
MPQPLLPALP PLSSPSGAGS CGPSGGEVKQ EPVGGRGRRE WRVAPSSRPR SSPRLALPTQ 60
CSGRRLFRRR ARGLRSDNME AVKTFNSELY SLNDYKPPIS KAKMTQITKA AIKAIKFYKH 120
VVQSVEKFIQ KCKPEYKVPG LYVIDSIVRQ SRHQFGQEKD VFAPRFSNNI ISTFQNLYRC 180
PGDDKSKIVR VLNLWQKNNV FKSEIIQPLL DMAAGIPPPV VTPVLASTTT AMSNTPGTPV 240
TPVTPANVVQ GLPDPWVSQI TNTDTLAAVA QILQSPQGQQ LQQLIQTLQI QQHKPQPSIL 300
QALDAGLVVQ LQALTAQLTA AAAAANTLTP LEQGVSFNKK LMDRFDFGED SEHSEEPKKE 360
IPASQLSHVS ESVNNSIFHQ IAEQLQQQNL EHLRQQLLEQ QQPQKATPQD SQEGTFGSEH 420
SASPSQGSSQ QHFLEPEVNL DDSIDIQQQD MDIDEGQDGV EEEVFEQEAK KVAVRSRSRT 480
HSRSRSRSPR KRRSRSRSGS RKRKHRKRSR SRSRERKRKS SRSYSSERRA REREKERQKK 540
GLPPIRSKTL SVCSTTLWVG QVDKKATQQD LTNLFEEFGQ IESINMIPPR GCAYVCMVHR 600
QDAFRALQKL SSGSYKIGSK VIKIAWALNK GVKTEYKQFW DVDLGVTYIP WEKVKVDDLE 660
GFAEGGMIDQ ETVNTEWETV KSSEPVKETV QTTQSPTPVE KETVVTTQAE VFPPPVAMLQ 720
IPVAPAVPTV SLVPPAFPVS MPVPPPGFSP IPPPPFLRAS FNPSQPPPGF MPPPVPPPVV 780
PPPTIPPVVP TSLVQPSLSM TPETVKDVGF GSLVIPGGSV ASNLATSALP AGNVFNAPTK 840
QAEPEEKVPH LIDHQISSGE NTRSVIPNDI SSNAAILGGQ PPNVTSNSGI LGVQRPNVSS 900
NSEILGVRPS NVSSSSGIIA AQPPNILNNS GILGIQPPSV SNSSGLLGVL PPNIPNNSGL 960
VGVQPPNVPN TPGLLGTQPP AGPQNLPPLS IPNQRMPTMP MLDIRPGLIP QAPGPRFPLI 1020
QPGIPPQRGI PPPSVLDSAL HPPPRGPFPP GDIFSQPERP FLAPGRQSVD NVTNPEKRIP 1080
LGNDNIQQEG DRDYRFPPIE TRESISRPPP VDVRDVVGRP IDPREGPGRP PLDGRDHFGR 1140
PPVDIRENLV RPGIDHLGRR DHFGFNPEKP WGHRGDFDER EHRVLPVYGG PKGLHEERGR 1200
FRSGNYRFDP RSGPWNRGFG QEVHRDFDDR RRPWERQRDR DDRDFDFCRE MNGNRLGRDR 1260
IQNTWVPPPH ARVFDYFEGA TSQRKGDNVP QVNGENTERH AQPPPIPVQN DPELYEKLTS 1320
SNEINKEKSD TVADIESEPV VESTETEGT 1349 
Gene Ontology
 GO:0003676; F:nucleic acid binding; IEA:InterPro.
 GO:0000166; F:nucleotide binding; IEA:InterPro. 
Interpro
 IPR006569; CID_dom.
 IPR008942; ENTH_VHS.
 IPR012677; Nucleotide-bd_a/b_plait.
 IPR006903; RNA_pol_II-bd.
 IPR000504; RRM_dom. 
Pfam
 PF04818; CTD_bind
 PF00076; RRM_1 
SMART
 SM00582; RPR
 SM00360; RRM 
PROSITE
 PS51391; CID
 PS50102; RRM 
PRINTS