CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-024845
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Putative pre-mRNA splicing factor RNA helicase 
Protein Synonyms/Alias
  
Gene Name
 At2g35340 
Gene Synonyms/Alias
  
Created Date
 July 27, 2013 
Organism
 Arabidopsis thaliana (Mouse-ear cress) 
NCBI Taxa ID
 3702 
Lysine Modification
Position
Peptide
Type
References
323PYLFGDEKLTEREIRubiquitination[1]
Reference
 [1] Multidimensional protein identification technology (MudPIT) analysis of ubiquitinated proteins in plants.
 Maor R, Jones A, Nühse TS, Studholme DJ, Peck SC, Shirasu K.
 Mol Cell Proteomics. 2007 Apr;6(4):601-10. [PMID: 17272265
Functional Description
  
Sequence Annotation
  
Keyword
 ATP-binding; Helicase; Hydrolase; Nucleotide-binding. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 1087 AA 
Protein Sequence
MGSNDLNTWV SDKLMVLLGF SQTAVVQYLI AMGKSWCSVL DQAIFSYDSK QSKSPGELVR 60
ELVECGFSLS GDTRAFAEEI YARAPRKTPG VNLYQQQEAE AAMLLKKQKT FSLLEADHDE 120
DENNVKKQSA SKTGKSDKGQ KRFRKKSEQL EDDDDEANYF DIFYSMTDFH YFIYVIVRED 180
KRNVRRKVSE DEDDGTESEE ERLRDQRERE ELEQHLRERD TARTRKLTEP KMSKKEQEEF 240
VRRDSAVDKG DIESLRKFSW QEYMKKRKQK KVLELKYMTL RVIFLLGSSV PNYTVDPKLT 300
SPFSSFLHRD DIEDEPYLFG DEKLTEREIR EFRYKREIYE LIKKSTQEED NVGEYRMPDA 360
YDQQGSVDQE KRFAVSVQRY RDMGSAEKMN PFAEQEAWED HQIENAALKF GAKNKEVSDN 420
YEFVFEDQID FIKASVLAGD NEDRKALPIY TYRDQLLNAV KDHQVLIIVG ETGSGKTTQI 480
PQYLHEAGYT KLGKVGCTQP RRVAAMSVAA RVAQEMGGKL GHEVGYSIRF EDCTSEKTIL 540
KYMTDGMLLR ELLGEPDLGS YSVIIVDEAH ERTLRTDILF GLVKDIARAR PDLKLLISSA 600
TMDAEKFSDF FDQAPIFRFP GRRYPVDICF TTAPEADYMD AAITTVLTIH VKEPLGDVLV 660
FLPGQEEIEA VEENLKHKIR GLGTKIRELI ICPIYANLPS ELQAKIFEPT PEGARKVVLA 720
TNIAETSLTI DGIKYVVDPG FSKMKSYNPR TGMESLLVTP ISKASATQRT GRAGRTSPGK 780
CYRLYTAFNY YNDLEDNTVP EIQRTNLASV VLSLKSLGIH NLLNFDFMDP PPSEALIKSL 840
ELLFALGALN QLGELTKAGR RMAEFPLDPM LSKMIVVSDK YKCSDEIISI AAMLSIGPSI 900
FYRPKDKQVH ADNAMKNFHV GNVGDHIAFL KIYNSWKETN YSTQWCYENY IQVRSMKRAR 960
DIRDQLEGLL ERVEIDVSSN ANELDSIRKS IVAGFFPHTA KLQKNGSYRT VKHPQTVHIH 1020
PASGLSQVLP RWVVYHQLVL TSKEYMRQVT ELKPEWLIEI APHYYQLKDV EDATSKKMPK 1080
TSGRAVV 1087 
Gene Ontology
 GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
 GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.
 GO:0003676; F:nucleic acid binding; IEA:InterPro. 
Interpro
 IPR003593; AAA+_ATPase.
 IPR011545; DNA/RNA_helicase_DEAD/DEAH_N.
 IPR002464; DNA/RNA_helicase_DEAH_CS.
 IPR011709; DUF1605.
 IPR007502; Helicase-assoc_dom.
 IPR014001; Helicase_ATP-bd.
 IPR001650; Helicase_C.
 IPR027417; P-loop_NTPase. 
Pfam
 PF00270; DEAD
 PF04408; HA2
 PF00271; Helicase_C
 PF07717; OB_NTP_bind 
SMART
 SM00382; AAA
 SM00487; DEXDc
 SM00847; HA2
 SM00490; HELICc 
PROSITE
 PS00690; DEAH_ATP_HELICASE
 PS51192; HELICASE_ATP_BIND_1
 PS51194; HELICASE_CTER 
PRINTS