CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-003372
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Uncharacterized HTH-type transcriptional regulator YbiH 
Protein Synonyms/Alias
  
Gene Name
 ybiH 
Gene Synonyms/Alias
 b0796; JW0780 
Created Date
 July 27, 2013 
Organism
 Escherichia coli (strain K12) 
NCBI Taxa ID
 83333 
Lysine Modification
Position
Peptide
Type
References
108RACRNMIKLLTQDDTacetylation[1]
183ILAFRLGKETILLRTacetylation[1]
Reference
 [1] Acetyl-Phosphate Is a Critical Determinant of Lysine Acetylation in E. coli.
 Weinert BT, Iesmantavicius V, Wagner SA, Schölz C, Gummesson B, Beli P, Nyström T, Choudhary C.
 Mol Cell. 2013 Jul 25;51(2):265-72. [PMID: 23830618
Functional Description
  
Sequence Annotation
 DOMAIN 11 70 HTH tetR-type.
 DNA_BIND 33 52 H-T-H motif (Potential).  
Keyword
 Complete proteome; DNA-binding; Reference proteome; Transcription; Transcription regulation. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 223 AA 
Protein Sequence
MNNPAMTIKG EQAKKQLIAA ALAQFGEYGM NATTREIAAQ AGQNIAAITY YFGSKEDLYL 60
ACAQWIADFI GEQFRPHAEE AERLFAQPQP DRAAIRELIL RACRNMIKLL TQDDTVNLSK 120
FISREQLSPT AAYHLVHEQV ISPLHSHLTR LIAAWTGCDA NDTRMILHTH ALIGEILAFR 180
LGKETILLRT GWTAFDEEKT ELINQTVTCH IDLILQGLSQ RSL 223 
Gene Ontology
 GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
 GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.
 GO:0006351; P:transcription, DNA-dependent; ISS:EcoCyc. 
Interpro
 IPR023772; DNA-bd_HTH_TetR-type_CS.
 IPR009057; Homeodomain-like.
 IPR001647; HTH_TetR.
 IPR015893; Tet_transcr_reg_TetR-like_C.
 IPR011075; Tet_transcr_reg_TetR-rel_C.
 IPR015292; Tscrpt_reg_YbiH_C. 
Pfam
 PF09209; DUF1956
 PF00440; TetR_N 
SMART
  
PROSITE
 PS01081; HTH_TETR_1
 PS50977; HTH_TETR_2 
PRINTS
 PR00455; HTHTETR.