CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-007535
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Enoyl-CoA delta isomerase 1, mitochondrial 
Protein Synonyms/Alias
 3,2-trans-enoyl-CoA isomerase; Delta(3),Delta(2)-enoyl-CoA isomerase; D3,D2-enoyl-CoA isomerase; Dodecenoyl-CoA isomerase 
Gene Name
 Eci1 
Gene Synonyms/Alias
 Dci 
Created Date
 July 27, 2013 
Organism
 Mus musculus (Mouse) 
NCBI Taxa ID
 10090 
Lysine Modification
Position
Peptide
Type
References
48PAGVAVMKLRNPPVNacetylation[1, 2, 3]
48PAGVAVMKLRNPPVNsuccinylation[2]
71EFTISLEKLENDKSIacetylation[2, 4]
71EFTISLEKLENDKSIsuccinylation[2]
76LEKLENDKSIRGVILacetylation[1, 2, 3, 4, 5, 6]
76LEKLENDKSIRGVILsuccinylation[2]
113AHYAEYWKNVQELWLacetylation[1, 3]
158RVMADNPKYTIGLNEacetylation[2]
158RVMADNPKYTIGLNEsuccinylation[2]
206FSPAEALKVGVVDEVacetylation[1]
222PEDQVHSKARSVMTKacetylation[1, 2, 3, 4, 6, 7]
222PEDQVHSKARSVMTKsuccinylation[2]
229KARSVMTKWLAIPDHacetylation[1, 2, 3, 4, 5, 6, 7, 8, 9]
229KARSVMTKWLAIPDHsuccinylation[2]
255ATADNLIKQREADIQacetylation[1, 2, 3, 6]
255ATADNLIKQREADIQsuccinylation[2]
270NFTSFISKDSIQKSLacetylation[1, 2, 3, 4, 5, 6, 9, 10]
270NFTSFISKDSIQKSLsuccinylation[2]
270NFTSFISKDSIQKSLubiquitination[11]
275ISKDSIQKSLHMYLEacetylation[1, 2, 3, 6]
275ISKDSIQKSLHMYLEsuccinylation[2]
283SLHMYLEKLKQKKG*acetylation[1, 2, 3, 6]
283SLHMYLEKLKQKKG*succinylation[2]
Reference
 [1] Label-free quantitative proteomics of the lysine acetylome in mitochondria identifies substrates of SIRT3 in metabolic pathways.
 Rardin MJ, Newman JC, Held JM, Cusack MP, Sorensen DJ, Li B, Schilling B, Mooney SD, Kahn CR, Verdin E, Gibson BW.
 Proc Natl Acad Sci U S A. 2013 Apr 16;110(16):6601-6. [PMID: 23576753]
 [2] SIRT5-Mediated Lysine Desuccinylation Impacts Diverse Metabolic Pathways.
 Park J, Chen Y, Tishkoff DX, Peng C, Tan M, Dai L, Xie Z, Zhang Y, Zwaans BM, Skinner ME, Lombard DB, Zhao Y.
 Mol Cell. 2013 Jun 27;50(6):919-30. [PMID: 23806337]
 [3] Quantification of mitochondrial acetylation dynamics highlights prominent sites of metabolic regulation.
 Still AJ, Floyd BJ, Hebert AS, Bingman CA, Carson JJ, Gunderson DR, Dolan BK, Grimsrud PA, Dittenhafer-Reed KE, Stapleton DS, Keller MP, Westphall MS, Denu JM, Attie AD, Coon JJ, Pagliarini DJ.
 J Biol Chem. 2013 Jul 17;. [PMID: 23864654]
 [4] Quantitative assessment of the impact of the gut microbiota on lysine epsilon-acetylation of host proteins using gnotobiotic mice.
 Simon GM, Cheng J, Gordon JI.
 Proc Natl Acad Sci U S A. 2012 Jul 10;109(28):11133-8. [PMID: 22733758]
 [5] Mitochondrial acetylome analysis in a mouse model of alcohol-induced liver injury utilizing SIRT3 knockout mice.
 Fritz KS, Galligan JJ, Hirschey MD, Verdin E, Petersen DR.
 J Proteome Res. 2012 Mar 2;11(3):1633-43. [PMID: 22309199]
 [6] Calorie restriction and SIRT3 trigger global reprogramming of the mitochondrial protein acetylome.
 Hebert AS, Dittenhafer-Reed KE, Yu W, Bailey DJ, Selen ES, Boersma MD, Carson JJ, Tonelli M, Balloon AJ, Higbee AJ, Westphall MS, Pagliarini DJ, Prolla TA, Assadi-Porter F, Roy S, Denu JM, Coon JJ.
 Mol Cell. 2013 Jan 10;49(1):186-99. [PMID: 23201123]
 [7] Circadian acetylome reveals regulation of mitochondrial metabolic pathways.
 Masri S, Patel VR, Eckel-Mahan KL, Peleg S, Forne I, Ladurner AG, Baldi P, Imhof A, Sassone-Corsi P.
 Proc Natl Acad Sci U S A. 2013 Feb 26;110(9):3339-44. [PMID: 23341599]
 [8] The fasted/fed mouse metabolic acetylome: N6-acetylation differences suggest acetylation coordinates organ-specific fuel switching.
 Yang L, Vaitheesvaran B, Hartil K, Robinson AJ, Hoopmann MR, Eng JK, Kurland IJ, Bruce JE.
 J Proteome Res. 2011 Sep 2;10(9):4134-49. [PMID: 21728379]
 [9] Quantitative acetylome analysis reveals the roles of SIRT1 in regulating diverse substrates and cellular pathways.
 Chen Y, Zhao W, Yang JS, Cheng Z, Luo H, Lu Z, Tan M, Gu W, Zhao Y.
 Mol Cell Proteomics. 2012 Oct;11(10):1048-62. [PMID: 22826441]
 [10] Proteomic investigations of lysine acetylation identify diverse substrates of mitochondrial deacetylase sirt3.
 Sol EM, Wagner SA, Weinert BT, Kumar A, Kim HS, Deng CX, Choudhary C.
 PLoS One. 2012;7(12):e50545. [PMID: 23236377]
 [11] Proteomic analyses reveal divergent ubiquitylation site patterns in murine tissues.
 Wagner SA, Beli P, Weinert BT, Schölz C, Kelstrup CD, Young C, Nielsen ML, Olsen JV, Brakebusch C, Choudhary C.
 Mol Cell Proteomics. 2012 Dec;11(12):1578-85. [PMID: 22790023
Functional Description
 Able to isomerize both 3-cis and 3-trans double bonds into the 2-trans form in a range of enoyl-CoA species. 
Sequence Annotation
 REGION 93 97 Substrate binding (By similarity).
 BINDING 140 140 Substrate; via amide nitrogen (By
 BINDING 164 164 Substrate (By similarity).
 MOD_RES 76 76 N6-acetyllysine (By similarity).  
Keyword
 Acetylation; Complete proteome; Fatty acid metabolism; Isomerase; Lipid metabolism; Mitochondrion; Reference proteome; Transit peptide. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 289 AA 
Protein Sequence
MALAAARRLL LHAGSRLGRR EAVDGARRFA NKRVLVETEG PAGVAVMKLR NPPVNSLSLE 60
CLTEFTISLE KLENDKSIRG VILTSECPGI FSAGLDLLEM YGRNPAHYAE YWKNVQELWL 120
RLYTSNMILV SAINGASPAG GCLLALCCDY RVMADNPKYT IGLNESLLGI VAPFWFKDMY 180
VNTIGHREAE RALQLGTLFS PAEALKVGVV DEVVPEDQVH SKARSVMTKW LAIPDHSRQL 240
TKNMMRKATA DNLIKQREAD IQNFTSFISK DSIQKSLHMY LEKLKQKKG 289 
Gene Ontology
 GO:0005743; C:mitochondrial inner membrane; IDA:MGI.
 GO:0005759; C:mitochondrial matrix; IEA:UniProtKB-SubCell.
 GO:0004165; F:dodecenoyl-CoA delta-isomerase activity; IDA:MGI.
 GO:0006635; P:fatty acid beta-oxidation; IMP:MGI. 
Interpro
 IPR001753; Crotonase_core_superfam.
 IPR018376; Enoyl-CoA_hyd/isom_CS. 
Pfam
 PF00378; ECH 
SMART
  
PROSITE
 PS00166; ENOYL_COA_HYDRATASE 
PRINTS