CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-000237
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Thioredoxin domain-containing protein 9 
Protein Synonyms/Alias
 ATP-binding protein associated with cell differentiation; Protein 1-4 
Gene Name
 TXNDC9 
Gene Synonyms/Alias
 APACD 
Created Date
 July 27, 2013 
Organism
 Homo sapiens (Human) 
NCBI Taxa ID
 9606 
Lysine Modification
Position
Peptide
Type
References
35HLDSEIQKLDQMDEDubiquitination[1]
62LRKAQQQKQEWLSKGubiquitination[1, 2]
87RDFFQEVKESENVVCubiquitination[2]
116RHLAILSKKHLETKFubiquitination[2]
117HLAILSKKHLETKFLubiquitination[2]
130FLKLNVEKAPFLCERubiquitination[2]
141LCERLHIKVIPTLALubiquitination[3, 4]
150IPTLALLKDGKTQDYubiquitination[2]
153LALLKDGKTQDYVVGubiquitination[2]
Reference
 [1] Systematic and quantitative assessment of the ubiquitin-modified proteome.
 Kim W, Bennett EJ, Huttlin EL, Guo A, Li J, Possemato A, Sowa ME, Rad R, Rush J, Comb MJ, Harper JW, Gygi SP.
 Mol Cell. 2011 Oct 21;44(2):325-40. [PMID: 21906983]
 [2] Refined preparation and use of anti-diglycine remnant (K-ε-GG) antibody enables routine quantification of 10,000s of ubiquitination sites in single proteomics experiments.
 Udeshi ND, Svinkina T, Mertins P, Kuhn E, Mani DR, Qiao JW, Carr SA.
 Mol Cell Proteomics. 2013 Mar;12(3):825-31. [PMID: 23266961]
 [3] A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles.
 Wagner SA, Beli P, Weinert BT, Nielsen ML, Cox J, Mann M, Choudhary C.
 Mol Cell Proteomics. 2011 Oct;10(10):M111.013284. [PMID: 21890473]
 [4] hCKSAAP_UbSite: improved prediction of human ubiquitination sites by exploiting amino acid pattern and properties.
 Chen Z, Zhou Y, Song J, Zhang Z.
 Biochim Biophys Acta. 2013 Aug;1834(8):1461-7. [PMID: 23603789
Functional Description
 Significantly diminishes the chaperonin TCP1 complex ATPase activity, thus negatively impacts protein folding, including that of actin or tubulin. 
Sequence Annotation
 DOMAIN 74 180 Thioredoxin.
 MOD_RES 188 188 Phosphoserine.
 MOD_RES 219 219 Phosphotyrosine (By similarity).
 MOD_RES 221 221 Phosphoserine.
 MOD_RES 223 223 Phosphoserine.  
Keyword
 Complete proteome; Phosphoprotein; Polymorphism; Reference proteome. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 226 AA 
Protein Sequence
MEADASVDMF SKVLEHQLLQ TTKLVEEHLD SEIQKLDQMD EDELERLKEK RLQALRKAQQ 60
QKQEWLSKGH GEYREIPSER DFFQEVKESE NVVCHFYRDS TFRCKILDRH LAILSKKHLE 120
TKFLKLNVEK APFLCERLHI KVIPTLALLK DGKTQDYVVG FTDLGNTDDF TTETLEWRLG 180
SSDILNYSGN LMEPPFQNQK KFGTNFTKLE KKTIRGKKYD SDSDDD 226 
Gene Ontology
 GO:0005813; C:centrosome; IEA:Compara.
 GO:0005737; C:cytoplasm; IEA:Compara.
 GO:0030496; C:midbody; IEA:Compara.
 GO:0005634; C:nucleus; IEA:Compara.
 GO:0045454; P:cell redox homeostasis; IEA:InterPro. 
Interpro
 IPR012336; Thioredoxin-like_fold.
 IPR013766; Thioredoxin_domain. 
Pfam
 PF00085; Thioredoxin 
SMART
  
PROSITE
 PS51352; THIOREDOXIN_2 
PRINTS