| Tag | Content |
|---|
| CPLM ID | CPLM-026757 |
UniProt Accession | |
Genbank Protein ID | |
Genbank Nucleotide ID | |
Protein Name | RNA polymerase sigma factor |
Protein Synonyms/Alias | |
Gene Name | rpoD |
Gene Synonyms/Alias | RPA1288 |
Created Date | July 27, 2013 |
Organism | Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) |
NCBI Taxa ID | 258594 |
Lysine Modification | Position | Peptide | Type | References |
|---|
| 42 | DLSDAAVKKMIKQAK | acetylation | [1] | | 334 | ERKYKKLKDEIIVEV | acetylation | [1] | | 462 | REARQAKKEMVEANL | acetylation | [1] |
|
Reference | [1] System-wide studies of N-lysine acetylation in Rhodopseudomonas palustris reveal substrate specificity of protein acetyltransferases. Crosby HA, Pelletier DA, Hurst GB, Escalante-Semerena JC. J Biol Chem. 2012 May 4;287(19):15590-601. [ PMID: 22416131] |
Functional Description | Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released (By similarity). |
Sequence Annotation | |
Keyword | Complete proteome; DNA-binding; Sigma factor; Transcription; Transcription regulation. |
Sequence Source | UniProt (SWISSPROT/TrEMBL); GenBank; EMBL |
Protein Length | 698 AA |
Protein Sequence | MASKAKTVQV QDKDKDDKVD APEKDSVDAP SPLLDLSDAA VKKMIKQAKK RGFVTFDQLN 60
EVLPSDTTSP EQIEDIMSML SDMGINVSEA EDTEAEEEEA KEEADEELDN DLVEVTAKAV 120
TETKKSEPGE RTDDPVRMYL REMGTVELLS REGEIAIAKR IEAGREAMIA GLCESPLTFQ 180
AIIIWRDELN EGKIFLRDII DLEATYAGPE GKNNIGEPGE EAAAEGEGGA PAHVAPPAAP 240
PSATPFRPAQ QRGAAPAEAE GEGAPEGDGD DDEFENQMSL AAIEAELKPK VVETFDKIAD 300
NYKKLRKLQE QDIANQLQNE QLSPSQERKY KKLKDEIIVE VKSLRLNQAR IDSLVEQLYD 360
INKKLVSFES RLMRLADSHG VARDDFLRNY QGSELDPRWL NRVSKLSAKG WKNFVHHEKD 420
RIKDLRQEVQ SMAALTGLEI GEFRKIVHSV QKGEREARQA KKEMVEANLR LVISIAKKYT 480
NRGLQFLDLI QEGNIGLMKA VDKFEYRRGY KFSTYATWWI RQAITRSIAD QARTIRIPVH 540
MIETINKIVR TSRQMLNEIG REPTPEELAE KLGMPLEKVR KVLKIAKEPL SLETPVGDEE 600
DSHLGDFIED KNAVLPIDAA IQSNLRETTT RVLASLTPRE ERVLRMRFGI GMNTDHTLEE 660
VGQQFSVTRE RIRQIEAKAL RKLKHPSRSR KLRSFLDN 698 |
Gene Ontology | GO:0003677; F:DNA binding; IEA:UniProtKB-KW. GO:0003700; F:sequence-specific DNA binding transcription factor activity; IEA:InterPro. GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW. GO:0006352; P:DNA-dependent transcription, initiation; IEA:InterPro. |
Interpro | |
Pfam | |
SMART | |
PROSITE | |
PRINTS | |