CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-000122
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Nucleoside diphosphate kinase, mitochondrial 
Protein Synonyms/Alias
 NDK; NDP kinase, mitochondrial; Nucleoside diphosphate kinase D; NDPKD; nm23-H4 
Gene Name
 NME4 
Gene Synonyms/Alias
 NM23D 
Created Date
 July 27, 2013 
Organism
 Homo sapiens (Human) 
NCBI Taxa ID
 9606 
Lysine Modification
Position
Peptide
Type
References
91HYQDLRRKPFYPALIacetylation[1]
Reference
 [1] Lysine acetylation targets protein complexes and co-regulates major cellular functions.
 Choudhary C, Kumar C, Gnad F, Nielsen ML, Rehman M, Walther TC, Olsen JV, Mann M.
 Science. 2009 Aug 14;325(5942):834-40. [PMID: 19608861
Functional Description
 Major role in the synthesis of nucleoside triphosphates other than ATP (By similarity). 
Sequence Annotation
 ACT_SITE 151 151 Pros-phosphohistidine intermediate (By
 BINDING 45 45 ATP (By similarity).
 BINDING 93 93 ATP (By similarity).
 BINDING 121 121 ATP (By similarity).
 BINDING 127 127 ATP (By similarity).
 BINDING 138 138 ATP (By similarity).
 BINDING 148 148 ATP (By similarity).  
Keyword
 3D-structure; ATP-binding; Complete proteome; Direct protein sequencing; Kinase; Magnesium; Metal-binding; Mitochondrion; Nucleotide metabolism; Nucleotide-binding; Reference proteome; Transferase; Transit peptide. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 187 AA 
Protein Sequence
MGGLFWRSAL RGLRCGPRAP GPSLLVRHGS GGPSWTRERT LVAVKPDGVQ RRLVGDVIQR 60
FERRGFTLVG MKMLQAPESV LAEHYQDLRR KPFYPALIRY MSSGPVVAMV WEGYNVVRAS 120
RAMIGHTDSA EAAPGTIRGD FSVHISRNVI HASDSVEGAQ REIQLWFQSS ELVSWADGGQ 180
HSSIHPA 187 
Gene Ontology
 GO:0005743; C:mitochondrial inner membrane; TAS:Reactome.
 GO:0005758; C:mitochondrial intermembrane space; IEA:UniProtKB-SubCell.
 GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
 GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
 GO:0004550; F:nucleoside diphosphate kinase activity; EXP:Reactome.
 GO:0006241; P:CTP biosynthetic process; IEA:InterPro.
 GO:0006183; P:GTP biosynthetic process; IEA:InterPro.
 GO:0015949; P:nucleobase-containing small molecule interconversion; TAS:Reactome.
 GO:0009116; P:nucleoside metabolic process; TAS:ProtInc.
 GO:0006228; P:UTP biosynthetic process; IEA:InterPro. 
Interpro
 IPR001564; Nucleoside_diP_kinase.
 IPR023005; Nucleoside_diP_kinase_AS. 
Pfam
 PF00334; NDK 
SMART
 SM00562; NDK 
PROSITE
 PS00469; NDP_KINASES 
PRINTS
 PR01243; NUCDPKINASE.