CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-013964
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Zinc finger CCCH domain-containing protein 13 
Protein Synonyms/Alias
  
Gene Name
 ZC3H13 
Gene Synonyms/Alias
 KIAA0853 
Created Date
 July 27, 2013 
Organism
 Homo sapiens (Human) 
NCBI Taxa ID
 9606 
Lysine Modification
Position
Peptide
Type
References
1593SNLGPCCKALCFRRDubiquitination[1]
1616KNEKGTIKQAYTSAPubiquitination[1]
Reference
 [1] Refined preparation and use of anti-diglycine remnant (K-ε-GG) antibody enables routine quantification of 10,000s of ubiquitination sites in single proteomics experiments.
 Udeshi ND, Svinkina T, Mertins P, Kuhn E, Mani DR, Qiao JW, Carr SA.
 Mol Cell Proteomics. 2013 Mar;12(3):825-31. [PMID: 23266961
Functional Description
  
Sequence Annotation
 ZN_FING 36 64 C3H1-type.
 MOD_RES 64 64 Phosphoserine.
 MOD_RES 198 198 Phosphoserine.
 MOD_RES 207 207 Phosphoserine.
 MOD_RES 209 209 Phosphoserine.
 MOD_RES 237 237 Phosphothreonine.
 MOD_RES 242 242 Phosphoserine.
 MOD_RES 263 263 Phosphothreonine.
 MOD_RES 265 265 Phosphoserine.
 MOD_RES 316 316 Phosphoserine.
 MOD_RES 318 318 Phosphoserine.
 MOD_RES 325 325 Phosphoserine.
 MOD_RES 328 328 Phosphoserine.
 MOD_RES 354 354 Phosphothreonine.
 MOD_RES 364 364 Phosphothreonine.
 MOD_RES 370 370 Phosphoserine.
 MOD_RES 372 372 Phosphoserine.
 MOD_RES 381 381 Phosphoserine.
 MOD_RES 831 831 Phosphoserine.
 MOD_RES 833 833 Phosphoserine.
 MOD_RES 837 837 Phosphoserine.
 MOD_RES 845 845 Phosphoserine.
 MOD_RES 848 848 Phosphoserine.
 MOD_RES 853 853 Phosphoserine.
 MOD_RES 875 875 Phosphoserine.
 MOD_RES 877 877 Phosphoserine.
 MOD_RES 882 882 Phosphothreonine.
 MOD_RES 986 986 Phosphoserine.
 MOD_RES 993 993 Phosphoserine.
 MOD_RES 1010 1010 Phosphoserine.
 MOD_RES 1014 1014 Phosphoserine.
 MOD_RES 1017 1017 Phosphoserine.
 MOD_RES 1170 1170 Phosphothreonine.
 MOD_RES 1191 1191 Phosphoserine.
 MOD_RES 1194 1194 Phosphoserine.
 MOD_RES 1208 1208 Phosphoserine.
 MOD_RES 1210 1210 Phosphoserine.
 MOD_RES 1230 1230 Phosphoserine.
 MOD_RES 1364 1364 Phosphoserine.
 MOD_RES 1366 1366 Phosphoserine.
 MOD_RES 1382 1382 Phosphoserine.
 MOD_RES 1438 1438 Phosphoserine.
 MOD_RES 1465 1465 Phosphoserine.  
Keyword
 Alternative splicing; Coiled coil; Complete proteome; Metal-binding; Phosphoprotein; Polymorphism; Reference proteome; Repeat; Zinc; Zinc-finger. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 1668 AA 
Protein Sequence
MSKIRRKVTV ENTKTISDST SRRPSVFERL GPSTGSTAET QCRNWLKTGN CLYGNTCRFV 60
HGPSPRGKGY SSNYRRSPER PTGDLRERMK NKRQDVDTEP QKRNTEESSS PVRKESSRGR 120
HREKEDIKIT KERTPESEEE NVEWETNRDD SDNGDINYDY VHELSLEMKR QKIQRELMKL 180
EQENMEKREE IIIKKEVSPE VVRSKLSPSP SLRKSSKSPK RKSSPKSSSA SKKDRKTSAV 240
SSPLLDQQRN SKTNQSKKKG PRTPSPPPPI PEDIALGKKY KEKYKVKDRI EEKTRDGKDR 300
GRDFERQREK RDKPRSTSPA GQHHSPISSR HHSSSSQSGS SIQRHSPSPR RKRTPSPSYQ 360
RTLTPPLRRS ASPYPSHSLS SPQRKQSPPR HRSPMREKGR HDHERTSQSH DRRHERREDT 420
RGKRDREKDS REEREYEQDQ SSSRDHRDDR EPRDGRDRRD ARDTRDRREL RDSRDMRDSR 480
EMRDYSRDTK ESRDPRDSRS TRDAHDYRDR EGRDTHRKED TYPEESRSYG RNHLREESSR 540
TEIRNESRNE SRSEIRNDRM GRSRGRVPEL PEKGSRGSRG SQIDSHSSNS NYHDSWETRS 600
SYPERDRYPE RDNRDQARDS SFERRHGERD RRDNRERDQR PSSPIRHQGR NDELERDERR 660
EERRVDRVDD RRDERARERD RERERDRERE RERERERDRE REKERELERE RARERERERE 720
KERDRERDRD RDHDRERERE RERDREKERE REREERERER ERERERERER ERERERARER 780
DKERERQRDW EDKDKGRDDR REKREEIRED RNPRDGHDER KSKKRYRNEG SPSPRQSPKR 840
RREHSPDSDA YNSGDDKNEK HRLLSQVVRP QESRSLSPSH LTEDRQGRWK EEDRKPERKE 900
SSRRYEEQEL KEKVSSVDKQ REQTEILESS RMRAQDIIGH HQSEDRETSD RAHDENKKKA 960
KIQKKPIKKK KEDDVGIERG NIETTSEDGQ VFSPKKGQKK KSIEKKRKKS KGDSDISDEE 1020
AAQQSKKKRG PRTPPITTKE ELVEMCNGKN GILEDSQKKE DTAFSDWSDE DVPDRTEVTE 1080
AEHTATATTP GSTPSPLSSL LPPPPPVATA TATTVPATLA ATTAAAATSF STSAITISTS 1140
ATPTNTTNNT FANEDSHRKC HRTRVEKVET PHVTIEDAQH RKPMDQKRSS SLGSNRSNRS 1200
HTSGRLRSPS NDSAHRSGDD QSGRKRVLHS GSRDREKTKS LEITGERKSR IDQLKRGEPS 1260
RSTSSDRQDS RSHSSRRSSP ESDRQVHSRS GSFDSRDRLQ ERDRYEHDRE RERERRDTRQ 1320
REWDRDADKD WPRNRDRDRL RERERERERD KRRDLDRERE RLISDSVERD RDRDRDRTFE 1380
SSQIESVKRC EAKLEGEHER DLESTSRDSL ALDKERMDKD LGSVQGFEET NKSERTESLE 1440
GDDESKLDDA HSLGSGAGEG YEPISDDELD EILAGDAEKR EDQQDEEKMP DPLDVIDVDW 1500
SGLMPKHPKE PREPGAALLK FTPGAVMLRV GISKKLAGSE LFAKVKETCQ RLLEKPKDAD 1560
NLFEHELGAL NMAALLRKEE RASLLSNLGP CCKALCFRRD SAIRKQLVKN EKGTIKQAYT 1620
SAPMVDNELL RLSLRLFKRK TTCHAPGHEK TEDNKLSQSS IQQELCVS 1668 
Gene Ontology
 GO:0003676; F:nucleic acid binding; IEA:InterPro.
 GO:0008270; F:zinc ion binding; IEA:InterPro. 
Interpro
 IPR000571; Znf_CCCH. 
Pfam
 PF00642; zf-CCCH 
SMART
 SM00356; ZnF_C3H1 
PROSITE
 PS50103; ZF_C3H1 
PRINTS