CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-007017
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Chromatin modification-related protein YNG2 
Protein Synonyms/Alias
 ESA1-associated factor 4; ING1 homolog 2 
Gene Name
 YNG2 
Gene Synonyms/Alias
 EAF4; NBN1; YHR090C 
Created Date
 July 27, 2013 
Organism
 Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) 
NCBI Taxa ID
 559292 
Lysine Modification
Position
Peptide
Type
References
145VVSNSSVKKRRAASSacetylation[1]
146VSNSSVKKRRAASSSacetylation[1]
170KKTSRTSKLQNEIDVacetylation[1, 2]
208FKNSRNGKGQNGSPEacetylation[1]
Reference
 [1] mChIP-KAT-MS, a method to map protein interactions and acetylation sites for lysine acetyltransferases.
 Mitchell L, Huard S, Cotrut M, Pourhanifeh-Lemeri R, Steunou AL, Hamza A, Lambert JP, Zhou H, Ning Z, Basu A, Côté J, Figeys DA, Baetz K.
 Proc Natl Acad Sci U S A. 2013 Apr 23;110(17):E1641-50. [PMID: 23572591]
 [2] Proteome-wide analysis of lysine acetylation suggests its broad regulatory scope in Saccharomyces cerevisiae.
 Henriksen P, Wagner SA, Weinert BT, Sharma S, Bacinskaja G, Rehman M, Juffer AH, Walther TC, Lisby M, Choudhary C.
 Mol Cell Proteomics. 2012 Nov;11(11):1510-22. [PMID: 22865919
Functional Description
 Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. The NuA4 complex is also involved in DNA repair. Involved in cell cycle progression and meiosis. 
Sequence Annotation
 ZN_FING 222 271 PHD-type.
 BINDING 224 224 Histone H3K4me3 (By similarity).
 BINDING 235 235 Histone H3K4me3 (By similarity).
 BINDING 239 239 Histone H3K4me3 (By similarity).
 BINDING 247 247 Histone H3K4me3 (By similarity).
 MOD_RES 183 183 Phosphoserine.
 MOD_RES 185 185 Phosphothreonine.
 MOD_RES 188 188 Phosphoserine.  
Keyword
 Cell cycle; Chromatin regulator; Coiled coil; Complete proteome; Direct protein sequencing; DNA damage; DNA repair; Meiosis; Metal-binding; Nucleus; Phosphoprotein; Reference proteome; Zinc; Zinc-finger. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 282 AA 
Protein Sequence
MDPSLVLEQT IQDVSNLPSE FRYLLEEIGS NDLKLIEEKK KYEQKESQIH KFIRQQGSIP 60
KHPQEDGLDK EIKESLLKCQ SLQREKCVLA NTALFLIARH LNKLEKNIAL LEEDGVLAPV 120
EEDGDMDSAA EASRESSVVS NSSVKKRRAA SSSGSVPPTL KKKKTSRTSK LQNEIDVSSR 180
EKSVTPVSPS IEKKIARTKE FKNSRNGKGQ NGSPENEEED KTLYCFCQRV SFGEMVACDG 240
PNCKYEWFHY DCVNLKEPPK GTWYCPECKI EMEKNKLKRK RN 282 
Gene Ontology
 GO:0005829; C:cytosol; IDA:SGD.
 GO:0032777; C:Piccolo NuA4 histone acetyltransferase complex; IDA:SGD.
 GO:0035064; F:methylated histone residue binding; IDA:UniProtKB.
 GO:0008270; F:zinc ion binding; IEA:InterPro.
 GO:0006281; P:DNA repair; IDA:SGD.
 GO:0016573; P:histone acetylation; IDA:SGD.
 GO:0007126; P:meiosis; IEA:UniProtKB-KW. 
Interpro
 IPR024610; ING_N.
 IPR019786; Zinc_finger_PHD-type_CS.
 IPR011011; Znf_FYVE_PHD.
 IPR001965; Znf_PHD.
 IPR019787; Znf_PHD-finger.
 IPR013083; Znf_RING/FYVE/PHD. 
Pfam
 PF12998; ING
 PF00628; PHD 
SMART
 SM00249; PHD 
PROSITE
 PS01359; ZF_PHD_1
 PS50016; ZF_PHD_2 
PRINTS