CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-016474
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 RUN and FYVE domain-containing protein 1 
Protein Synonyms/Alias
 Rab4-interacting protein 
Gene Name
 Rufy1 
Gene Synonyms/Alias
 Rabip4 
Created Date
 July 27, 2013 
Organism
 Mus musculus (Mouse) 
NCBI Taxa ID
 10090 
Lysine Modification
Position
Peptide
Type
References
359DRICSLQKEQQQLREubiquitination[1]
Reference
 [1] Proteomic analyses reveal divergent ubiquitylation site patterns in murine tissues.
 Wagner SA, Beli P, Weinert BT, Schölz C, Kelstrup CD, Young C, Nielsen ML, Olsen JV, Brakebusch C, Choudhary C.
 Mol Cell Proteomics. 2012 Dec;11(12):1578-85. [PMID: 22790023
Functional Description
 Binds phospholipid vesicles containing phosphatidylinositol 3-phosphate and participates in early endosomal trafficking. 
Sequence Annotation
 DOMAIN 143 275 RUN.
 ZN_FING 646 704 FYVE-type.
 REGION 619 629 Interaction with RAB4.
 MOD_RES 393 393 Phosphotyrosine (By similarity).
 MOD_RES 404 404 Phosphotyrosine (By similarity).  
Keyword
 Coiled coil; Complete proteome; Cytoplasm; Endocytosis; Endosome; Lipid-binding; Membrane; Metal-binding; Phosphoprotein; Protein transport; Reference proteome; Transport; Zinc; Zinc-finger. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 712 AA 
Protein Sequence
MAARGECRRA GQDSEPEPER EPESEPGPEP EPQAGLESGE AFEIVDRSQL PSPGELRSAS 60
RPRVADSWSA PILTLARRAT GNLSASCGSA LRAAAGLGDG GGGGERAASK GQMMEERANL 120
MHMMKLSIKV LLQSALSLGR SLDADYAPLQ QFFVVMEHCL KHGLKVKKSF IGQNKSFFGP 180
LELVEKLCPE ASDIATSVRN LPELKTAVGR GRAWLYLALM QKKLADYLKV LIDNKQLLSE 240
FYEPEALMME EEGMVIVGLL VGLNVLDANL CLKGEDLDSQ VGVIDFSLCL KDAQDLDSGR 300
EHERITDVLD QKNYVEELNR HLSCTVGDLQ TKIDGLEKTN SKLQEELSAA TDRICSLQKE 360
QQQLREQNEV IRERSEKSVE ITKQDTKVEL ETYKQTRQGL DEMYSDVWKQ LKEEKKVRLE 420
LEKELELQIG MKTEMEIAMK LLEKDTHEKQ DTLVALRQQL EEVKAINLQM FHKVQSAESS 480
LQQKNEAIAS FEGKTTQVMS SMKQMEERLQ QAERARQAAE ERSHKLQQEL SGRGSALQLQ 540
LSQLRDQCSG LEKELKSEKE QRQALQRELQ REKDTSCLLQ TELQQVEGLK KELRELQDEK 600
AELRKVCEEQ EQALQEMGLH LSQSKLKMED IKEVNKALKG HTWLKDDEAT HCKQCEKDFS 660
ISRRKHHCRN CGHIFCNTCS SNELALPSYP KPVRVCDSCH TLLLQRCSST AS 712 
Gene Ontology
 GO:0005737; C:cytoplasm; IDA:MGI.
 GO:0031901; C:early endosome membrane; IEA:UniProtKB-SubCell.
 GO:0008289; F:lipid binding; IEA:UniProtKB-KW.
 GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
 GO:0008565; F:protein transporter activity; IDA:MGI.
 GO:0006897; P:endocytosis; IEA:UniProtKB-KW.
 GO:0030100; P:regulation of endocytosis; IDA:MGI. 
Interpro
 IPR004012; Run.
 IPR000306; Znf_FYVE.
 IPR017455; Znf_FYVE-rel.
 IPR011011; Znf_FYVE_PHD.
 IPR013083; Znf_RING/FYVE/PHD. 
Pfam
 PF01363; FYVE
 PF02759; RUN 
SMART
 SM00064; FYVE
 SM00593; RUN 
PROSITE
 PS50826; RUN
 PS50178; ZF_FYVE 
PRINTS