CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-006087
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Pyruvate carboxylase 2 
Protein Synonyms/Alias
 Pyruvic carboxylase 2; PCB 2 
Gene Name
 PYC2 
Gene Synonyms/Alias
 YBR218C; YBR1507 
Created Date
 July 27, 2013 
Organism
 Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) 
NCBI Taxa ID
 559292 
Lysine Modification
Position
Peptide
Type
References
370ITTEDPSKNFQPDTGubiquitination[1]
543WRQVLLEKGPSEFAKubiquitination[1]
1125HKGSLVKKGESIAVLubiquitination[1]
Reference
 [1] Global analysis of phosphorylation and ubiquitylation cross-talk in protein degradation.
 Swaney DL, Beltrao P, Starita L, Guo A, Rush J, Fields S, Krogan NJ, VillĂ©n J.
 Nat Methods. 2013 Jul;10(7):676-82. [PMID: 23749301
Functional Description
 Pyruvate carboxylase catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second. 
Sequence Annotation
 DOMAIN 19 471 Biotin carboxylation.
 DOMAIN 141 338 ATP-grasp.
 DOMAIN 558 825 Carboxyltransferase.
 DOMAIN 1102 1169 Biotinyl-binding.
 REGION 566 570 Substrate binding (By similarity).
 ACT_SITE 313 313 By similarity.
 METAL 567 567 Divalent metal cation (By similarity).
 METAL 735 735 Divalent metal cation; via carbamate
 METAL 765 765 Divalent metal cation (By similarity).
 METAL 767 767 Divalent metal cation (By similarity).
 BINDING 137 137 ATP (By similarity).
 BINDING 221 221 ATP (By similarity).
 BINDING 256 256 ATP (By similarity).
 BINDING 639 639 Substrate (By similarity).
 BINDING 899 899 Substrate (By similarity).
 MOD_RES 735 735 N6-carboxylysine (By similarity).
 MOD_RES 1136 1136 N6-biotinyllysine (By similarity).  
Keyword
 ATP-binding; Biotin; Complete proteome; Cytoplasm; Gluconeogenesis; Ligase; Metal-binding; Multifunctional enzyme; Nucleotide-binding; Reference proteome; Zinc. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 1180 AA 
Protein Sequence
MSSSKKLAGL RDNFSLLGEK NKILVANRGE IPIRIFRSAH ELSMRTIAIY SHEDRLSMHR 60
LKADEAYVIG EEGQYTPVGA YLAMDEIIEI AKKHKVDFIH PGYGFLSENS EFADKVVKAG 120
ITWIGPPAEV IDSVGDKVSA RHLAARANVP TVPGTPGPIE TVQEALDFVN EYGYPVIIKA 180
AFGGGGRGMR VVREGDDVAD AFQRATSEAR TAFGNGTCFV ERFLDKPKHI EVQLLADNHG 240
NVVHLFERDC SVQRRHQKVV EVAPAKTLPR EVRDAILTDA VKLAKVCGYR NAGTAEFLVD 300
NQNRHYFIEI NPRIQVEHTI TEEITGIDIV SAQIQIAAGA TLTQLGLLQD KITTRGFSIQ 360
CRITTEDPSK NFQPDTGRLE VYRSAGGNGV RLDGGNAYAG ATISPHYDSM LVKCSCSGST 420
YEIVRRKMIR ALIEFRIRGV KTNIPFLLTL LTNPVFIEGT YWTTFIDDTP QLFQMVSSQN 480
RAQKLLHYLA DLAVNGSSIK GQIGLPKLKS NPSVPHLHDA QGNVINVTKS APPSGWRQVL 540
LEKGPSEFAK QVRQFNGTLL MDTTWRDAHQ SLLATRVRTH DLATIAPTTA HALAGAFALE 600
CWGGATFDVA MRFLHEDPWE RLRKLRSLVP NIPFQMLLRG ANGVAYSSLP DNAIDHFVKQ 660
AKDNGVDIFR VFDALNDLEQ LKVGVNAVKK AGGVVEATVC YSGDMLQPGK KYNLDYYLEV 720
VEKIVQMGTH ILGIKDMAGT MKPAAAKLLI GSLRTRYPDL PIHVHSHDSA GTAVASMTAC 780
ALAGADVVDV AINSMSGLTS QPSINALLAS LEGNIDTGIN VEHVRELDAY WAEMRLLYSC 840
FEADLKGPDP EVYQHEIPGG QLTNLLFQAQ QLGLGEQWAE TKRAYREANY LLGDIVKVTP 900
TSKVVGDLAQ FMVSNKLTSD DIRRLANSLD FPDSVMDFFE GLIGQPYGGF PEPLRSDVLR 960
NKRRKLTCRP GLELEPFDLE KIREDLQNRF GDIDECDVAS YNMYPRVYED FQKIRETYGD 1020
LSVLPTKNFL APAEPDEEIE VTIEQGKTLI IKLQAVGDLN KKTGQREVYF ELNGELRKIR 1080
VADKSQNIQS VAKPKADVHD THQIGAPMAG VIIEVKVHKG SLVKKGESIA VLSAMKMEMV 1140
VSSPADGQVK DVFIKDGESV DASDLLVVLE EETLPPSQKK 1180 
Gene Ontology
 GO:0005829; C:cytosol; IDA:SGD.
 GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
 GO:0004075; F:biotin carboxylase activity; IEA:InterPro.
 GO:0003677; F:DNA binding; IEA:InterPro.
 GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
 GO:0004736; F:pyruvate carboxylase activity; IMP:SGD.
 GO:0006094; P:gluconeogenesis; IMP:SGD. 
Interpro
 IPR013785; Aldolase_TIM.
 IPR011761; ATP-grasp.
 IPR013815; ATP_grasp_subdomain_1.
 IPR013816; ATP_grasp_subdomain_2.
 IPR001882; Biotin_BS.
 IPR011764; Biotin_carboxylation_dom.
 IPR005482; Biotin_COase_C.
 IPR000089; Biotin_lipoyl.
 IPR005481; CarbamoylP_synth_lsu_N.
 IPR003379; Carboxylase_cons_dom.
 IPR005479; CbamoylP_synth_lsu-like_ATP-bd.
 IPR009057; Homeodomain-like.
 IPR016185; PreATP-grasp_dom.
 IPR000891; PYR_CT.
 IPR005930; Pyruv_COase.
 IPR011054; Rudment_hybrid_motif.
 IPR011053; Single_hybrid_motif. 
Pfam
 PF02785; Biotin_carb_C
 PF00364; Biotin_lipoyl
 PF00289; CPSase_L_chain
 PF02786; CPSase_L_D2
 PF00682; HMGL-like
 PF02436; PYC_OADA 
SMART
 SM00878; Biotin_carb_C 
PROSITE
 PS50975; ATP_GRASP
 PS50979; BC
 PS00188; BIOTIN
 PS50968; BIOTINYL_LIPOYL
 PS50989; COA_CT_CTER
 PS50980; COA_CT_NTER
 PS00866; CPSASE_1
 PS00867; CPSASE_2
 PS50991; PYR_CT 
PRINTS