CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-036628
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
  
Protein Name
 Putative deoxyribonuclease TATDN1 
Protein Synonyms/Alias
  
Gene Name
 TATDN1 
Gene Synonyms/Alias
  
Created Date
 July 27, 2013 
Organism
 Homo sapiens (Human) 
NCBI Taxa ID
 9606 
Lysine Modification
Position
Peptide
Type
References
27GIYRGVQKHQDDLQDacetylation[1]
27GIYRGVQKHQDDLQDubiquitination[2]
45RAVEIGVKKFMITGGubiquitination[2]
46AVEIGVKKFMITGGNubiquitination[1, 2, 3]
86TRCGEFEKNNPDLYLubiquitination[1, 3, 4]
94NNPDLYLKELLNLAEubiquitination[2, 5, 6]
104LNLAENNKGKVVAIGubiquitination[2, 6]
106LAENNKGKVVAIGECubiquitination[6]
130CPKDTQLKYFEKQFEubiquitination[2, 6]
134TQLKYFEKQFELSEQubiquitination[2, 6]
162AEFLDIMKRNRDRCVubiquitination[2, 3, 6]
246EANLEVLKSIPSEKLubiquitination[2, 6]
265DAPWCGVKSTHAGSKubiquitination[3]
272KSTHAGSKYIRTAFPubiquitination[2]
Reference
 [1] Integrated proteomic analysis of post-translational modifications by serial enrichment.
 Mertins P, Qiao JW, Patel J, Udeshi ND, Clauser KR, Mani DR, Burgess MW, Gillette MA, Jaffe JD, Carr SA.
 Nat Methods. 2013 Jul;10(7):634-7. [PMID: 23749302]
 [2] Systematic and quantitative assessment of the ubiquitin-modified proteome.
 Kim W, Bennett EJ, Huttlin EL, Guo A, Li J, Possemato A, Sowa ME, Rad R, Rush J, Comb MJ, Harper JW, Gygi SP.
 Mol Cell. 2011 Oct 21;44(2):325-40. [PMID: 21906983]
 [3] Refined preparation and use of anti-diglycine remnant (K-ε-GG) antibody enables routine quantification of 10,000s of ubiquitination sites in single proteomics experiments.
 Udeshi ND, Svinkina T, Mertins P, Kuhn E, Mani DR, Qiao JW, Carr SA.
 Mol Cell Proteomics. 2013 Mar;12(3):825-31. [PMID: 23266961]
 [4] Systems-wide analysis of ubiquitylation dynamics reveals a key role for PAF15 ubiquitylation in DNA-damage bypass.
 Povlsen LK, Beli P, Wagner SA, Poulsen SL, Sylvestersen KB, Poulsen JW, Nielsen ML, Bekker-Jensen S, Mailand N, Choudhary C.
 Nat Cell Biol. 2012 Oct;14(10):1089-98. [PMID: 23000965]
 [5] Global identification of modular cullin-RING ligase substrates.
 Emanuele MJ, Elia AE, Xu Q, Thoma CR, Izhar L, Leng Y, Guo A, Chen YN, Rush J, Hsu PW, Yen HC, Elledge SJ.
 Cell. 2011 Oct 14;147(2):459-74. [PMID: 21963094]
 [6] Landscape of the PARKIN-dependent ubiquitylome in response to mitochondrial depolarization.
 Sarraf SA, Raman M, Guarani-Pereira V, Sowa ME, Huttlin EL, Gygi SP, Harper JW.
 Nature. 2013 Apr 18;496(7445):372-6. [PMID: 23503661
Functional Description
  
Sequence Annotation
  
Keyword
 Complete proteome; Reference proteome. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 322 AA 
Protein Sequence
MSRFKFIDIG INLTDPMFRG IYRGVQKHQD DLQDVIGRAV EIGVKKFMIT GGNLQDSKDA 60
LHLAQTNGMF FSTVGCHPTR CGEFEKNNPD LYLKELLNLA ENNKGKVVAI GECGLDFDRL 120
QFCPKDTQLK YFEKQFELSE QTKLPMFLHC RNSHAEFLDI MKRNRDRCVG GVVHSFDGTK 180
EAAAALIDLD LYIGFNALCI HIHVISDYGR TVYSVTVIHL CSQRNRGSKK LGNSSLKTEA 240
NLEVLKSIPS EKLMIETDAP WCGVKSTHAG SKYIRTAFPT KKKWESGHCL KDRNEPCHII 300
QILEIMSAVR DEDPLELANT LY 322 
Gene Ontology
 GO:0016888; F:endodeoxyribonuclease activity, producing 5'-phosphomonoesters; IEA:InterPro. 
Interpro
 IPR018228; DNase_TatD-rel_CS.
 IPR001130; TatD_family. 
Pfam
 PF01026; TatD_DNase 
SMART
  
PROSITE
 PS01091; TATD_3 
PRINTS