CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-008444
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Hepatoma-derived growth factor 
Protein Synonyms/Alias
 HDGF 
Gene Name
 Hdgf 
Gene Synonyms/Alias
 Tdrm1 
Created Date
 July 27, 2013 
Organism
 Mus musculus (Mouse) 
NCBI Taxa ID
 10090 
Lysine Modification
Position
Peptide
Type
References
11SNRQKEYKCGDLVFAubiquitination[1]
39EMPEAAVKSTANKYQubiquitination[1]
70LFPYEESKEKFGKPNubiquitination[1]
80FGKPNKRKGFSEGLWubiquitination[1]
96IENNPTVKASGYQSSubiquitination[1]
125AHEGDGDKKGSAEGSubiquitination[1]
146LVIDEPAKEKNEKGTubiquitination[1]
Reference
 [1] Proteomic analyses reveal divergent ubiquitylation site patterns in murine tissues.
 Wagner SA, Beli P, Weinert BT, Schölz C, Kelstrup CD, Young C, Nielsen ML, Olsen JV, Brakebusch C, Choudhary C.
 Mol Cell Proteomics. 2012 Dec;11(12):1578-85. [PMID: 22790023
Functional Description
 Heparin-binding protein, with mitogenic activity for fibroblasts. Acts as a transcriptional repressor (By similarity). 
Sequence Annotation
 DOMAIN 12 69 PWWP.
 MOTIF 75 80 Nuclear localization signal (By
 MOTIF 155 170 Bipartite nuclear localization signal (By
 BINDING 19 19 Heparin (By similarity).
 BINDING 21 21 Heparin (By similarity).
 BINDING 72 72 Heparin (By similarity).
 BINDING 75 75 Heparin (By similarity).
 BINDING 79 79 Heparin (By similarity).
 BINDING 80 80 Heparin (By similarity).
 MOD_RES 44 44 N6-acetyllysine (By similarity).
 MOD_RES 128 128 Phosphoserine.
 MOD_RES 132 132 Phosphoserine.
 MOD_RES 133 133 Phosphoserine.
 MOD_RES 165 165 Phosphoserine.
 MOD_RES 199 199 Phosphoserine.
 MOD_RES 200 200 Phosphothreonine (By similarity).
 MOD_RES 202 202 Phosphoserine.
 MOD_RES 206 206 Phosphoserine.
 MOD_RES 236 236 Phosphoserine (By similarity).
 CROSSLNK 80 80 Glycyl lysine isopeptide (Lys-Gly)  
Keyword
 Acetylation; Complete proteome; Cytoplasm; DNA-binding; Growth factor; Heparin-binding; Isopeptide bond; Nucleotide-binding; Nucleus; Phosphoprotein; Reference proteome; Repressor; Transcription; Transcription regulation; Ubl conjugation. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 237 AA 
Protein Sequence
MSRSNRQKEY KCGDLVFAKM KGYPHWPARI DEMPEAAVKS TANKYQVFFF GTHETAFLGP 60
KDLFPYEESK EKFGKPNKRK GFSEGLWEIE NNPTVKASGY QSSQKKSCAA EPEVEPEAHE 120
GDGDKKGSAE GSSDEEGKLV IDEPAKEKNE KGTLKRRAGD VLEDSPKRPK ESGDHEEEDK 180
EIAALEGERP LPVEVEKNST PSEPDSGQGP PAEEEEGEEE AAKEEAEAQG VRDHESL 237 
Gene Ontology
 GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
 GO:0005615; C:extracellular space; IDA:MGI.
 GO:0005634; C:nucleus; IDA:MGI.
 GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
 GO:0008083; F:growth factor activity; ISO:MGI.
 GO:0008201; F:heparin binding; IEA:UniProtKB-KW.
 GO:0000166; F:nucleotide binding; IEA:UniProtKB-KW.
 GO:0009987; P:cellular process; IDA:MGI.
 GO:0000122; P:negative regulation of transcription from RNA polymerase II promoter; IEA:Compara.
 GO:0045944; P:positive regulation of transcription from RNA polymerase II promoter; IEA:Compara.
 GO:0034504; P:protein localization to nucleus; IEA:Compara.
 GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW. 
Interpro
 IPR000313; PWWP. 
Pfam
 PF00855; PWWP 
SMART
 SM00293; PWWP 
PROSITE
 PS50812; PWWP 
PRINTS