CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-019330
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Selenocysteine lyase 
Protein Synonyms/Alias
 hSCL 
Gene Name
 SCLY 
Gene Synonyms/Alias
 SCL 
Created Date
 July 27, 2013 
Organism
 Homo sapiens (Human) 
NCBI Taxa ID
 9606 
Lysine Modification
Position
Peptide
Type
References
24SQPSGCGKHNSPERKubiquitination[1]
31KHNSPERKVYMDYNAubiquitination[1]
89LAKMIGGKPQDIIFTubiquitination[1]
240DAAQALGKQRVDVEDubiquitination[1]
307PMIAGLGKAAELVTQubiquitination[1]
341LEAEFGQKRIHLNSQubiquitination[1, 2]
Reference
 [1] Refined preparation and use of anti-diglycine remnant (K-ε-GG) antibody enables routine quantification of 10,000s of ubiquitination sites in single proteomics experiments.
 Udeshi ND, Svinkina T, Mertins P, Kuhn E, Mani DR, Qiao JW, Carr SA.
 Mol Cell Proteomics. 2013 Mar;12(3):825-31. [PMID: 23266961]
 [2] Methods for quantification of in vivo changes in protein ubiquitination following proteasome and deubiquitinase inhibition.
 Udeshi ND, Mani DR, Eisenhaure T, Mertins P, Jaffe JD, Clauser KR, Hacohen N, Carr SA.
 Mol Cell Proteomics. 2012 May;11(5):148-59. [PMID: 22505724
Functional Description
 Catalyzes the decomposition of L-selenocysteine to L- alanine and elemental selenium (By similarity). 
Sequence Annotation
 ACT_SITE 388 388 S-selanylcysteine intermediate (By
 MOD_RES 259 259 N6-(pyridoxal phosphate)lysine.  
Keyword
 3D-structure; Alternative splicing; Complete proteome; Cytoplasm; Lyase; Polymorphism; Pyridoxal phosphate; Reference proteome; Transferase. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 445 AA 
Protein Sequence
MEAAVAPGRD APAPAASQPS GCGKHNSPER KVYMDYNATT PLEPEVIQAM TKAMWEAWGN 60
PSSPYSAGRK AKDIINAARE SLAKMIGGKP QDIIFTSGGT ESNNLVIHSV VKHFHANQTS 120
KGHTGGHHSP VKGAKPHFIT SSVEHDSIRL PLEHLVEEQV AAVTFVPVSK VSGQAEVDDI 180
LAAVRPTTRL VTIMLANNET GIVMPVPEIS QRIKALNQER VAAGLPPILV HTDAAQALGK 240
QRVDVEDLGV DFLTIVGHKF YGPRIGALYI RGLGEFTPLY PMLFGGGQER NFRPGTENTP 300
MIAGLGKAAE LVTQNCEAYE AHMRDVRDYL EERLEAEFGQ KRIHLNSQFP GTQRLPNTCN 360
FSIRGPRLQG HVVLAQCRVL MASVGAACHS DHGDQPSPVL LSYGVPFDVA RNALRLSVGR 420
STTRAEVDLV VQDLKQAVAQ LEDQA 445 
Gene Ontology
 GO:0005829; C:cytosol; TAS:ProtInc.
 GO:0030170; F:pyridoxal phosphate binding; IEA:InterPro.
 GO:0009000; F:selenocysteine lyase activity; TAS:ProtInc.
 GO:0016740; F:transferase activity; IEA:UniProtKB-KW.
 GO:0006520; P:cellular amino acid metabolic process; TAS:ProtInc. 
Interpro
 IPR000192; Aminotrans_V/Cys_dSase.
 IPR016454; Cysteine_dSase_NifS.
 IPR015424; PyrdxlP-dep_Trfase.
 IPR015421; PyrdxlP-dep_Trfase_major_sub1.
 IPR015422; PyrdxlP-dep_Trfase_major_sub2. 
Pfam
 PF00266; Aminotran_5 
SMART
  
PROSITE
 PS00595; AA_TRANSFER_CLASS_5 
PRINTS