CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-023736
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Putative deoxyribose-phosphate aldolase 
Protein Synonyms/Alias
 DERA; 2-deoxy-D-ribose 5-phosphate aldolase; Phosphodeoxyriboaldolase; Deoxyriboaldolase 
Gene Name
 DERA 
Gene Synonyms/Alias
 CGI-26 
Created Date
 July 27, 2013 
Organism
 Homo sapiens (Human) 
NCBI Taxa ID
 9606 
Lysine Modification
Position
Peptide
Type
References
114CDAVKALKAAGCNIPubiquitination[1]
254TGNKIGFKPAGGIRSubiquitination[1]
263AGGIRSAKDSLAWLSubiquitination[2]
282ELGDEWLKPELFRIGubiquitination[2]
Reference
 [1] Refined preparation and use of anti-diglycine remnant (K-ε-GG) antibody enables routine quantification of 10,000s of ubiquitination sites in single proteomics experiments.
 Udeshi ND, Svinkina T, Mertins P, Kuhn E, Mani DR, Qiao JW, Carr SA.
 Mol Cell Proteomics. 2013 Mar;12(3):825-31. [PMID: 23266961]
 [2] Systematic and quantitative assessment of the ubiquitin-modified proteome.
 Kim W, Bennett EJ, Huttlin EL, Guo A, Li J, Possemato A, Sowa ME, Rad R, Rush J, Comb MJ, Harper JW, Gygi SP.
 Mol Cell. 2011 Oct 21;44(2):325-40. [PMID: 21906983
Functional Description
 Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate (By similarity). 
Sequence Annotation
 ACT_SITE 218 218 Schiff-base intermediate with
 ACT_SITE 254 254 By similarity.  
Keyword
 Complete proteome; Lyase; Reference proteome; Schiff base. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 318 AA 
Protein Sequence
MSAHNRGTEL DLSWISKIQV NHPAVLRRAE QIQARRTVKK EWQAAWLLKA VTFIDLTTLS 60
GDDTSSNIQR LCYKAKYPIR EDLLKALNMH DKGITTAAVC VYPARVCDAV KALKAAGCNI 120
PVASVAAGFP AGQTHLKTRL EEIRLAVEDG ATEIDVVINR SLVLTGQWEA LYDEIRQFRK 180
ACGEAHLKTI LATGELGTLT NVYKASMIAM MAGSDFIKTS TGKETVNATF PVAIVMLRAI 240
RDFFWKTGNK IGFKPAGGIR SAKDSLAWLS LVKEELGDEW LKPELFRIGA STLLSDIERQ 300
IYHHVTGRYA AYHDLPMS 318 
Gene Ontology
 GO:0005737; C:cytoplasm; IEA:InterPro.
 GO:0004139; F:deoxyribose-phosphate aldolase activity; IDA:UniProtKB.
 GO:0046121; P:deoxyribonucleoside catabolic process; IDA:UniProtKB.
 GO:0009264; P:deoxyribonucleotide catabolic process; IEA:InterPro.
 GO:0046386; P:deoxyribose phosphate catabolic process; IEA:UniProtKB-UniPathway. 
Interpro
 IPR013785; Aldolase_TIM.
 IPR011343; DeoC.
 IPR002915; DeoC/FbaB/lacD_aldolase. 
Pfam
 PF01791; DeoC 
SMART
  
PROSITE
  
PRINTS