CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-005105
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 E3 ubiquitin-protein ligase CBL 
Protein Synonyms/Alias
 Casitas B-lineage lymphoma proto-oncogene; Proto-oncogene c-Cbl; RING finger protein 55; Signal transduction protein CBL 
Gene Name
 CBL 
Gene Synonyms/Alias
 CBL2; RNF55 
Created Date
 July 27, 2013 
Organism
 Homo sapiens (Human) 
NCBI Taxa ID
 9606 
Lysine Modification
Position
Peptide
Type
References
7*MAGNVKKSSGAGGGubiquitination[1]
74VRLCQNPKLALKNSPubiquitination[1, 2]
105ILSRYEGKMETLGENubiquitination[1]
197WRKAFGEKTIVPWKSacetylation[3]
203EKTIVPWKSFRQALHubiquitination[1, 4]
424PFCRCEIKGTEPIVVubiquitination[1]
521SALGTASKAASGSLHubiquitination[1]
Reference
 [1] Refined preparation and use of anti-diglycine remnant (K-ε-GG) antibody enables routine quantification of 10,000s of ubiquitination sites in single proteomics experiments.
 Udeshi ND, Svinkina T, Mertins P, Kuhn E, Mani DR, Qiao JW, Carr SA.
 Mol Cell Proteomics. 2013 Mar;12(3):825-31. [PMID: 23266961]
 [2] Integrated proteomic analysis of post-translational modifications by serial enrichment.
 Mertins P, Qiao JW, Patel J, Udeshi ND, Clauser KR, Mani DR, Burgess MW, Gillette MA, Jaffe JD, Carr SA.
 Nat Methods. 2013 Jul;10(7):634-7. [PMID: 23749302]
 [3] Lysine acetylation targets protein complexes and co-regulates major cellular functions.
 Choudhary C, Kumar C, Gnad F, Nielsen ML, Rehman M, Walther TC, Olsen JV, Mann M.
 Science. 2009 Aug 14;325(5942):834-40. [PMID: 19608861]
 [4] Methods for quantification of in vivo changes in protein ubiquitination following proteasome and deubiquitinase inhibition.
 Udeshi ND, Mani DR, Eisenhaure T, Mertins P, Jaffe JD, Clauser KR, Hacohen N, Carr SA.
 Mol Cell Proteomics. 2012 May;11(5):148-59. [PMID: 22505724
Functional Description
 Adapter protein that functions as a negative regulator of many signaling pathways that are triggered by activation of cell surface receptors. Acts as an E3 ubiquitin-protein ligase, which accepts ubiquitin from specific E2 ubiquitin-conjugating enzymes, and then transfers it to substrates promoting their degradation by the proteasome. Recognizes activated receptor tyrosine kinases, including KIT, FLT1, FGFR1, FGFR2, PDGFRA, PDGFRB, EGFR, CSF1R, EPHA8 and KDR and terminates signaling. Recognizes membrane-bound HCK and other kinases of the SRC family and mediates their ubiquitination and degradation. Participates in signal transduction in hematopoietic cells. Plays an important role in the regulation of osteoblast differentiation and apoptosis. Essential for osteoclastic bone resorption. The Tyr-731 phosphorylated form induces the activation and recruitment of phosphatidylinositol 3-kinase to the cell membrane in a signaling pathway that is critical for osteoclast function. 
Sequence Annotation
 DOMAIN 47 351 Cbl-PTB.
 DOMAIN 856 895 UBA.
 ZN_FING 381 420 RING-type.
 REGION 1 357 Sufficient for interaction with EPHB1.
 REGION 47 175 4H.
 REGION 176 248 EF-hand-like.
 REGION 249 351 SH2-like.
 REGION 352 380 Linker.
 REGION 648 906 Interaction with CD2AP.
 BINDING 294 294 Phosphotyrosine (By similarity).
 MOD_RES 141 141 Phosphotyrosine.
 MOD_RES 197 197 N6-acetyllysine.
 MOD_RES 371 371 Phosphotyrosine; by INSR.
 MOD_RES 452 452 Phosphoserine.
 MOD_RES 455 455 Phosphotyrosine.
 MOD_RES 552 552 Phosphotyrosine.
 MOD_RES 667 667 Phosphoserine.
 MOD_RES 668 668 Phosphoserine (By similarity).
 MOD_RES 669 669 Phosphoserine.
 MOD_RES 674 674 Phosphotyrosine.
 MOD_RES 675 675 Phosphoserine.
 MOD_RES 700 700 Phosphotyrosine; by ABL1.
 MOD_RES 731 731 Phosphotyrosine; by SRC.
 MOD_RES 774 774 Phosphotyrosine.
 MOD_RES 900 900 Phosphoserine.  
Keyword
 3D-structure; Acetylation; Calcium; Cell membrane; Complete proteome; Cytoplasm; Disease mutation; Ligase; Membrane; Metal-binding; Phosphoprotein; Polymorphism; Proto-oncogene; Reference proteome; Repeat; Ubl conjugation; Ubl conjugation pathway; Zinc; Zinc-finger. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 906 AA 
Protein Sequence
MAGNVKKSSG AGGGSGSGGS GSGGLIGLMK DAFQPHHHHH HHLSPHPPGT VDKKMVEKCW 60
KLMDKVVRLC QNPKLALKNS PPYILDLLPD TYQHLRTILS RYEGKMETLG ENEYFRVFME 120
NLMKKTKQTI SLFKEGKERM YEENSQPRRN LTKLSLIFSH MLAELKGIFP SGLFQGDTFR 180
ITKADAAEFW RKAFGEKTIV PWKSFRQALH EVHPISSGLE AMALKSTIDL TCNDYISVFE 240
FDIFTRLFQP WSSLLRNWNS LAVTHPGYMA FLTYDEVKAR LQKFIHKPGS YIFRLSCTRL 300
GQWAIGYVTA DGNILQTIPH NKPLFQALID GFREGFYLFP DGRNQNPDLT GLCEPTPQDH 360
IKVTQEQYEL YCEMGSTFQL CKICAENDKD VKIEPCGHLM CTSCLTSWQE SEGQGCPFCR 420
CEIKGTEPIV VDPFDPRGSG SLLRQGAEGA PSPNYDDDDD ERADDTLFMM KELAGAKVER 480
PPSPFSMAPQ ASLPPVPPRL DLLPQRVCVP SSASALGTAS KAASGSLHKD KPLPVPPTLR 540
DLPPPPPPDR PYSVGAESRP QRRPLPCTPG DCPSRDKLPP VPSSRLGDSW LPRPIPKVPV 600
SAPSSSDPWT GRELTNRHSL PFSLPSQMEP RPDVPRLGST FSLDTSMSMN SSPLVGPECD 660
HPKIKPSSSA NAIYSLAARP LPVPKLPPGE QCEGEEDTEY MTPSSRPLRP LDTSQSSRAC 720
DCDQQIDSCT YEAMYNIQSQ APSITESSTF GEGNLAAAHA NTGPEESENE DDGYDVPKPP 780
VPAVLARRTL SDISNASSSF GWLSLDGDPT TNVTEGSQVP ERPPKPFPRR INSERKAGSC 840
QQGSGPAASA ATASPQLSSE IENLMSQGYS YQDIQKALVI AQNNIEMAKN ILREFVSISS 900
PAHVAT 906 
Gene Ontology
 GO:0005829; C:cytosol; TAS:Reactome.
 GO:0016600; C:flotillin complex; IEA:Compara.
 GO:0005634; C:nucleus; IEA:InterPro.
 GO:0005886; C:plasma membrane; IDA:HGNC.
 GO:0005509; F:calcium ion binding; IEA:InterPro.
 GO:0003700; F:sequence-specific DNA binding transcription factor activity; TAS:ProtInc.
 GO:0004871; F:signal transducer activity; IEA:InterPro.
 GO:0004842; F:ubiquitin-protein ligase activity; TAS:HGNC.
 GO:0008270; F:zinc ion binding; IEA:InterPro.
 GO:0007173; P:epidermal growth factor receptor signaling pathway; TAS:HGNC.
 GO:0008543; P:fibroblast growth factor receptor signaling pathway; TAS:Reactome.
 GO:0043066; P:negative regulation of apoptotic process; IMP:UniProtKB.
 GO:0042059; P:negative regulation of epidermal growth factor receptor signaling pathway; TAS:Reactome.
 GO:0014068; P:positive regulation of phosphatidylinositol 3-kinase cascade; IMP:BHF-UCL.
 GO:0048260; P:positive regulation of receptor-mediated endocytosis; TAS:HGNC. 
Interpro
 IPR024162; Adaptor_Cbl.
 IPR014741; Adaptor_Cbl_EF_hand-like.
 IPR003153; Adaptor_Cbl_N_hlx.
 IPR014742; Adaptor_Cbl_SH2-like.
 IPR024159; Cbl_PTB.
 IPR011992; EF-hand-like_dom.
 IPR000980; SH2.
 IPR009060; UBA-like.
 IPR000449; UBA/transl_elong_EF1B_N.
 IPR015940; UBA/transl_elong_EF1B_N_euk.
 IPR018957; Znf_C3HC4_RING-type.
 IPR001841; Znf_RING.
 IPR013083; Znf_RING/FYVE/PHD.
 IPR017907; Znf_RING_CS. 
Pfam
 PF02262; Cbl_N
 PF02761; Cbl_N2
 PF02762; Cbl_N3
 PF00627; UBA
 PF00097; zf-C3HC4 
SMART
 SM00184; RING
 SM00165; UBA 
PROSITE
 PS51506; CBL_PTB
 PS50030; UBA
 PS00518; ZF_RING_1
 PS50089; ZF_RING_2 
PRINTS