CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-034829
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 PDZ and LIM domain 3, isoform CRA_b 
Protein Synonyms/Alias
 PDZ and LIM domain protein 3 
Gene Name
 Pdlim3 
Gene Synonyms/Alias
 rCG_59049 
Created Date
 July 27, 2013 
Organism
 Rattus norvegicus (Rat) 
NCBI Taxa ID
 10116 
Lysine Modification
Position
Peptide
Type
References
124HKHNIRPKPFIIPGRacetylation[1]
Reference
 [1] Proteomic analysis of lysine acetylation sites in rat tissues reveals organ specificity and subcellular patterns.
 Lundby A, Lage K, Weinert BT, Bekker-Jensen DB, Secher A, Skovgaard T, Kelstrup CD, Dmytriyev A, Choudhary C, Lundby C, Olsen JV.
 Cell Rep. 2012 Aug 30;2(2):419-31. [PMID: 22902405] 
Functional Description
  
Sequence Annotation
  
Keyword
 Complete proteome; LIM domain; Metal-binding; Reference proteome; Zinc. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 364 AA 
Protein Sequence
MPQNVVLPGP APWGFRLSGG IDFNQPLVIT RITPGSKAEA ANLCPGDVIL AIDGFGTESM 60
THADAQDRIK AASYQLCLKI DRAETRLWSP QVSEDGKAHP FKINLEAEPQ DVNYFEHKHN 120
IRPKPFIIPG RTSGCSTPSG IDCGSGRSTP SSVSTVSTIC PGDLKVAAKM APNIPLEMEL 180
PGVKIVHAQF NTPMQLYSDD NIMETLQGQV STALGETPSM SEPTASVPPQ SDVYRMLHDN 240
RDEPAAPRQS GSFRVLQELV NDGSDDRPAG TRSVRAPVTK VHGGAGGAQR MPLCDKCGSG 300
IVGAVVKARD KYRHPECFVC ADCNLNLKQK GYFFVEGELY CEMHARARTR PPEGYDTVTL 360
YPKA 364 
Gene Ontology
 GO:0015629; C:actin cytoskeleton; IEA:Compara.
 GO:0008307; F:structural constituent of muscle; IEA:Compara.
 GO:0008270; F:zinc ion binding; IEA:InterPro.
 GO:0007015; P:actin filament organization; IEA:Compara.
 GO:0007507; P:heart development; IEA:Compara. 
Interpro
 IPR001478; PDZ.
 IPR006643; ZASP.
 IPR001781; Znf_LIM. 
Pfam
 PF00412; LIM
 PF00595; PDZ 
SMART
 SM00132; LIM
 SM00228; PDZ
 SM00735; ZM 
PROSITE
 PS00478; LIM_DOMAIN_1
 PS50023; LIM_DOMAIN_2
 PS50106; PDZ 
PRINTS